NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 2236876011

2236876011: Marine microbial communities from Columbia River, CM, sample from Newport Hydroline, GS310-3LG-Hyp-75m



Overview

Basic Information
IMG/M Taxon OID2236876011 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0047387 | Gp0054212 | Ga0011261
Sample NameMarine microbial communities from Columbia River, CM, sample from Newport Hydroline, GS310-3LG-Hyp-75m
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of South Carolina
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size83976010
Sequencing Scaffolds22
Novel Protein Genes25
Associated Families21

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Muricauda → unclassified Muricauda → Muricauda sp. TMED121
Not Available11
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium rassoulzadegani1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira oceanica2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMarine And Estuarine Microbial Communities From Columbia River Coastal Margin
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine Estuarine → Marine And Estuarine Microbial Communities From Columbia River Coastal Margin

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → estuary → estuarine water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationNewport Hydroline 10 km (NH10)
CoordinatesLat. (o)44.651Long. (o)-124.295Alt. (m)N/ADepth (m)75
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000075Metagenome / Metatranscriptome2622Y
F000155Metagenome / Metatranscriptome1877Y
F000787Metagenome / Metatranscriptome891Y
F000948Metagenome / Metatranscriptome823Y
F001217Metagenome / Metatranscriptome745Y
F002730Metagenome / Metatranscriptome534Y
F006114Metagenome / Metatranscriptome381Y
F012720Metagenome / Metatranscriptome278Y
F012917Metagenome / Metatranscriptome276Y
F017650Metagenome / Metatranscriptome239N
F018173Metagenome / Metatranscriptome236N
F021962Metagenome / Metatranscriptome216Y
F041186Metagenome / Metatranscriptome160Y
F042568Metagenome / Metatranscriptome158Y
F052545Metagenome / Metatranscriptome142Y
F055210Metagenome / Metatranscriptome139Y
F055215Metagenome / Metatranscriptome139N
F060358Metagenome / Metatranscriptome133N
F063840Metagenome / Metatranscriptome129Y
F080526Metagenome / Metatranscriptome115Y
F091209Metagenome / Metatranscriptome107Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
none_p024458All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum502Open in IMG/M
none_p072133All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Muricauda → unclassified Muricauda → Muricauda sp. TMED12503Open in IMG/M
none_p080277All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum510Open in IMG/M
none_p081492Not Available520Open in IMG/M
none_p084036Not Available555Open in IMG/M
none_p092652All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon514Open in IMG/M
none_p100140Not Available526Open in IMG/M
none_p101647All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium rassoulzadegani512Open in IMG/M
none_p113572All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira oceanica506Open in IMG/M
none_p141005All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium511Open in IMG/M
none_p156162Not Available521Open in IMG/M
none_p166071All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium514Open in IMG/M
none_p169359Not Available514Open in IMG/M
none_p171374Not Available507Open in IMG/M
none_p171836All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum500Open in IMG/M
none_p176674Not Available502Open in IMG/M
none_p197041Not Available506Open in IMG/M
none_p200003All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum506Open in IMG/M
none_p200878Not Available503Open in IMG/M
none_p211390Not Available509Open in IMG/M
none_p224308Not Available529Open in IMG/M
none_p243185All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira oceanica550Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
none_p024458none_0244581F006114NDPAAQLQGLMNAQASLHRLTANFSNKPNLDKVTGMAQKLGIPMTPELMQLGSNEAISNALVEIAVGMGKSEAEIGKALGPDM
none_p072133none_0721332F055210MLDLTTTFSKPNSIVTPFLRSFMGTFQVGIRNTISDKVFPTSSAVHNMYVKAFDIEEAYDIAMEIIKPYDMIVKDIVAPGDEI
none_p080277none_0802772F002730LEGLDGVLEDWLNRLHDTESSLHIVDLWLHAFDGLHLSGDLNEWLSIIKSLEDSGGKSFWMFLMAAVLANSGVS
none_p081492none_0814921F018173VNRQTKQYTAKAVADYLNINGKVAIAGQMNYQFVQDPSFKSGTFAFAAGSGGGTSWSSITSIVISNMDLSGQIVSPFLEYLVDEQVLFQDVAGKGSFGHYIMRGYTQIGTTNFYTLTLEYIGGNGSIDMDHYYTLVNFYLELGATGVDSVDTSDTTFIDMTPTTPTTGNVELQ
none_p084036none_0840361F012917NNVLNGMVLLKFLRFPLNDSGYYEKYDSLEEISQVWDRKKHLRRKRWSQE
none_p089037none_0890372F000155MKFACALIATVAANQYDNMNEDELLVNLSSTLSSALSSEARGDGDAAVAKTAAIKNIQKSLTARILKRLDDGQPLVEVARKMKAIEGMQP
none_p092652none_0926521F041186YETIPDYNRIYCDCEDIVEDAITRHYEDLLCKMENEIIDELLDEGYNHKIVNPINALQYIEMISQDDQFNKDLPKLYIGHINITVDEDYRYLNYASQIIKDRNRYEIVANHYGLTIERAVKGELIFNELKDEN
none_p096394none_0963941F000075MKFTLLVAAVAATKYDSMNEDELLVNLSSTLSSALDSEARGDGDAAVAKTAAIKNIQKSLTARILKRLDDGQPLVEVARKMKAIEGMQPQINDMERRLGIMQSVEPVLENAIKTLQKVRRCQRNGQEMRCFMTP
none_p100140none_1001401F001217MSKTKFNGFEKYFIQTALKHAIEEAEKDVLAAEADGKRSIYAPGYFTLVGNEIIDKVNSMTLKKYQN
none_p101647none_1016472F000787MKFTIIALVATVSAGLPPSAGLGHPIIPATREDFDNAKGVWKGDWASYRSAHPNDQDCSISESDNWKGAQQCSQSWECRGARLCERGGWCSGYDGCEGTHFQTKLQASLLTADRKSSVIV
none_p113572none_1135721F021962LPPQFTPRSKHYAIKTVWFREQIVTRGIVLVKIDTV*QLGDMFTKGLGKVPFEYLRKKIMGW
none_p141005none_1410052F000948GYDTFESIRRKNRSESKDISDYYNVTVSMMIQRKPVEAAAAPAKDPYNPEGNPSLSTTLDKGFPYDD
none_p156162none_1561621F018173YTAKAVADYLNINGKVAIAGQMNYQFVQDPSFKAGTFAFAAGSGGGTPWSSITSIVISNMDLSGQIVSPFLEYLVDEQVLFQDVAGKGSFGHYIMRGYTQIGTTNFYTLTLEYIGGNGSIDMDHYYTLVNFYLELGATGVDSVDTSDTTFIDMTPTAPTTGNVEITASLSATG
none_p166071none_1660711F017650MKFFALAALTATVTAVTIRGDFFEARDNGTGPLDKKYERVLPVQFADASDDLFMRSMIMNYAREGKNEDGSPNGVFTMTEAQTRGASAEVLGTHKKMDAGATKEYLNTYFPRTWAHFDVNKAGFVGVEVMATIRQI
none_p169359none_1693591F018173YPYDQTITDTDAWVGTDSVNRQTKQYTAKAVADYLNINGKVAIAGQMNYQFVQDPSFKSGTFAFAAGSGGGTPWSSITSIVISNMDLSGQVVSPFLEYLVDEQVLFQDVAGKGSFGHYIMRGYTQIGTTNFYTLTLEYIGVMDL
none_p171374none_1713741F063840MDGYALCDHLSEQLSRGIGGYFENFSSSVSRISEETYSQQAVYLSYTSP
none_p171836none_1718361F012720FDIPIDEVKAITLNRRPTYDLDHVESVTLKSFRKVVGYDTFNSILKKDRDEKKDQSDYYNVTVSMMIRRIPEDVAHPPTHDPYNPTGVTLTSTLDKGFPYDDGDNTTDDQTPNWKSQARPKSSQLVGKLNGENITKDALVNLIRDTDAPITQSLLFLDESKADSDN
none_p176674none_1766742F055215MKINDILKLPSIEIGDEILVGKFKNRKATVTGFAVDDNNQPVLKTTKGDQKLFNLE
none_p197041none_1970411F018173GLELTLSIDRLKQYTAKAVADYLNINGKVAIAGQMNYQFVQDPSFKAGTFAFAAGSGGGTSWSSITSIVISNMDLSGQIVSPFLEYLVDEQVLFQDVAGKGSFGHYIMRGYTQIGTTNFYTLTLEYIGGNGSIDMDHYYTLVNFYLELGATGVDSVDTSDTTFIDMTP
none_p200003none_2000031F042568MCSFLSHSSDINDLLEGFDGVLEDWLNRLHDTESSLHIVDLWLHAFDGLHLSGDLNKWLSIIKS
none_p200878none_2008781F091209MYKTIGLNLFLFTLIFYKYLEPRSAVKKLEDAGLIDNISELEDSAFPFVAINNIIPT
none_p211390none_2113901F060358MDDNLESVVAAVGLFIDNILHDMKNVSKSTTKPVILAHIDAWKNELETIK
none_p224308none_2243081F052545MSTDSSIMIRTPFKAKEFDGNKEDDQLDAGAWCLGRMGGSWVPAMYLCGTQSEAEGIRDEFLESMVEDEDDCQP
none_p232055none_2320551F000075MKFFALVAAVSASQYDSMTEDELLINLESTLSSAQRSEARSDGDAAVAKTAAIKNIQKALTARILKKIDDRQPLVEVARKMKAIEGMQPQINDMREDSVFXNRIVLGIMQSVKP
none_p243185none_2431851F080526MPNPLLPIAGAVVGVGTGTMISESALMTPKTIGLFYVGIAKTCYTSTGSKRIACAVAALACGTALIPGPHQGPFIVACAAASRGANKL
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