Sample 3300000035

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300000035

3300000035: Hoatzin crop microbial communities from Cojedes, Venezuela - Epithelial fraction 12

Overview

Basic Information
IMG/M Taxon OID	3300000035 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0060822 \| Gp0051908 \| Ga0026034
Sample Name	Hoatzin crop microbial communities from Cojedes, Venezuela - Epithelial fraction 12
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	1169488613
Sequencing Scaffolds	1
Novel Protein Genes	3
Associated Families	1

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Opisthokonta	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Hoatzin Crop Microbial Communities From Cojedes, Venezuela
Type	Host-Associated
Taxonomy	Host-Associated → Birds → Digestive System → Crop → Lumen → Hoatzin Crop → Hoatzin Crop Microbial Communities From Cojedes, Venezuela

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal proximal gut

Location Information
Location	Cojedes, Venezuela
Coordinates	Lat. (^o)	8.956944	Long. (^o)	-68.299167	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004001	Metagenome	457	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
HCE12Call500_c0293898	All Organisms → cellular organisms → Eukaryota → Opisthokonta	7541	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
HCE12Call500_c0050041	HCE12Call500_00500416	F004001	SPSLEVFKKHVDMALQVPWFSRHGGVGCMVGLDDL*
HCE12Call500_c0279643	HCE12Call500_02796431	F004001	SLEVFKKRVDIALQDMFSRHGGVGCMVGLDDLRGLFQP*
HCE12Call500_c0293898	HCE12Call500_02938989	F004001	AVVESPSLEEFKNRVDVALHDMVFSRHHGVGVTVGLDDLRGLF*

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