NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300000079

3300000079: Sheep rumen microbial communities from New Zealand - High methane



Overview

Basic Information
IMG/M Taxon OID3300000079 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0070997 | Gp0054623 | Ga0010834
Sample NameSheep rumen microbial communities from New Zealand - High methane
Sequencing StatusDraft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size160232843
Sequencing Scaffolds9
Novel Protein Genes11
Associated Families11

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available4
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora1
All Organisms → cellular organisms → Eukaryota1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Chroococcales → Aphanothecaceae → Crocosphaera → Crocosphaera subtropica1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Litostomatea → Trichostomatia → Entodiniomorphida → Ophryoscolecidae → Entodinium → Entodinium caudatum1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameCattle And Sheep Rumen Microbial Communities From New Zealand, For Comparative Studies
TypeHost-Associated
TaxonomyHost-Associated → Mammals → Digestive System → Foregut → Rumen → Sheep Rumen → Cattle And Sheep Rumen Microbial Communities From New Zealand, For Comparative Studies

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal proximal gut

Location Information
LocationNew Zealand
CoordinatesLat. (o)-42.26Long. (o)171.6Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004268Metagenome / Metatranscriptome446Y
F013263Metagenome272Y
F019573Metagenome / Metatranscriptome229Y
F026764Metagenome / Metatranscriptome196Y
F037527Metagenome / Metatranscriptome167Y
F048664Metagenome / Metatranscriptome148N
F050059Metagenome / Metatranscriptome145Y
F057038Metagenome / Metatranscriptome136Y
F067318Metagenome / Metatranscriptome125Y
F077961Metagenome / Metatranscriptome117N
F091029Metagenome / Metatranscriptome108N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
HighMDraftT1_c068662Not Available570Open in IMG/M
HighMDraftT1_c101808All Organisms → cellular organisms → Bacteria729Open in IMG/M
HighMDraftT1_c119040All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora666Open in IMG/M
HighMDraftT1_c145377All Organisms → cellular organisms → Eukaryota522Open in IMG/M
HighMDraftT1_c152293Not Available523Open in IMG/M
HighMDraftT1_c171935Not Available617Open in IMG/M
HighMDraftT1_c174202All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Chroococcales → Aphanothecaceae → Crocosphaera → Crocosphaera subtropica998Open in IMG/M
HighMDraftT1_c176698Not Available547Open in IMG/M
HighMDraftT1_c183404All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Litostomatea → Trichostomatia → Entodiniomorphida → Ophryoscolecidae → Entodinium → Entodinium caudatum653Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
HighMDraftT1_c068662HighMDraftT1_0686621F013263LRNQEKAIKARIDEISTEATNEAVAILAEKGLEKGEFEVESVGKFQLQRTEVFDFADYHKYQQEQAVKWRENAKEKVKEQNLVKARTAVMAGYVKTFVELYPDKEPDEVKLTVKVVE*
HighMDraftT1_c101808HighMDraftT1_1018081F050059ARGTALWESLVGKPRGKDTRENHRCFDPRGGLRDTAATALEESASACPHSRRGLTPLGRLQKYPKIHVSTGEESSGSGPDSTQGLRPRHRRESNPERPPRNSPGDWPFLRPAERVPEVPVVSREHLPQLEKIQEVLPSRRDEAHFR*
HighMDraftT1_c119040HighMDraftT1_1190402F091029MSALKEKIILFNNENAKLLEKAMKLEDELKNLQRTKRIDKLFDTFELDKNGLISTKLIMELLTGNKKYDVDEKFDKEGLIKFIESVVEMHSEEEKTLLDSLESALQGNTVFKEDLENPI
HighMDraftT1_c145377HighMDraftT1_1453771F037527FELIERREDLKSKYTAENQRVTAKKEKLFATGDINKFELGSDEKVVDKDRILKDKPYAFEHICKNDTSNLQKIYNQLGYANKMNMRELKKMIKEYCVRYVENVKKFDAEFYPSINDLVGTWTNLETFVMSANLPKPTGAK*
HighMDraftT1_c152293HighMDraftT1_1522931F067318FISNFSLIYNRRHNDYRYKFPVCNKSNCPRARGVCTRDNVCICLKNYITHENFTEYGEYQCNYLQSNQANIFILEFLFGFGTGHFFLGNYILGFCKLIYTLITAFLVAVSPCLEENKMLPPKLTKTKNFMIVGYVIWQLFDGAMILFDKYKDSNGVPMNSSWS*
HighMDraftT1_c171935HighMDraftT1_1719351F004268YTYMELLNEVVSKRVEQEIPKAHVKQFLLPEFFDPNKTESNDIYINAIFEYIINHLEEKNNMYVVLLYFYPFIKHEEEKTAENFFNFIRFITHSHREISKENVRKWLFHYLSFCTWGITSSIKSKLATNDDMNSSFNSLLKGPYSEDNLHKFLDKITQSLCEDPNASVYTLDMFKDMFKKYDISCVENIRDYLLTESIY*
HighMDraftT1_c174202HighMDraftT1_1742021F026764SKFLVYDELCKIKPHNARVMGLAYDPKPGYIYSCGSDRKFILSEINYLSNVTEIAESNAGYTNLQFDKANDRIFLTNEAGILSVFMTNSFPPSLVNVIQTHSTHCIRGLDIDYSKQYIFTGTNKGDISILDLGQPGKEKLIKEISYFGGNLEIRIIRYNAIDREIYTGDQKGKITVWSLKSGQSIYAWQAHQEAITQMKYFPNKRQLLSMAKDKKIIYWQLPENWVNDSIKKFQEENIREINNTRATERLQKAAQKKEGDDDSSSDDSLDGWDIRP*
HighMDraftT1_c176698HighMDraftT1_1766981F057038ESTYSKKTEQNETKFFTDFYLTNPNKHMDYIELVFDRMAYKFKPFEEKKDGKFRPKIRFGNDQKYLFKHWIVGVDVIGVDRFDFNFEDSTVKLYSKPSYDITKSKPQLLRDVFVYMTVICIMLGFMFRVFCQKKKANEIKPGEELIELN*
HighMDraftT1_c183404HighMDraftT1_1834042F019573MSMQFAQGYGTTSVGADFGAQPSLGPNIFPAQPGQLPPEAFQSQTPTVRTLPPKVVKNTLPPQYKTNTLPPKVVTTRLQPIFPPGTAPTALPQF*
HighMDraftT1_c186478HighMDraftT1_1864781F048664MSLITFDVKFKNKVDNESVRLLPDSELQQLKLMICGKYKIYDLNTLFIYYKGNLITQSDMTKIKEIFKMKRVRIEISETPLEKKKEDFKYFCSCKAGATSICDKCDEFLCDSCFKKKKHINHTNKIIKLSDYHSYIKTTLKDFASELDNKILNDEAYQFFQYWGYDVEN
HighMDraftT1_c194193HighMDraftT1_1941931F077961MSGNDKNTMSNHEIKTSLISIYDKINKPPTKEVGYDLFLKLVHRNLDSSAQMNFIINHIGEFISPLTPKEKDPCIKLLSLIFYSPESDEDSFDTKIYYPFLSPVLSILQNLIKDTNSSIFPTISNIFAEIVQNIMPTDIEASNIDLEPDEKTAYEMLQGFCIYNMKYDDKSNRIVGSLCLTKLVENCPIVLQRQYMKLI
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