NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300000114

3300000114: Passalidae beetle gut microbial communities from Costa Rica -Larvae (3ML+3BL)



Overview

Basic Information
IMG/M Taxon OID3300000114 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0050939 | Gp0054014 | Ga0026078
Sample NamePassalidae beetle gut microbial communities from Costa Rica -Larvae (3ML+3BL)
Sequencing StatusDraft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size804003313
Sequencing Scaffolds4
Novel Protein Genes4
Associated Families3

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NamePassalidae Beetle Gut Microbial Communities From Costa Rica
TypeHost-Associated
TaxonomyHost-Associated → Arthropoda → Digestive System → Midgut → Unclassified → Passalidae Beetle Gut → Passalidae Beetle Gut Microbial Communities From Costa Rica

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal proximal gut

Location Information
LocationQuebrada Gonzales Sector, Braulio Carrillo National Park, Costa Rica
CoordinatesLat. (o)10.207151Long. (o)-84.007673Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001800Metagenome / Metatranscriptome632Y
F066905Metagenome126Y
F096286Metagenome105N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
IMNBL3_c10000003All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes215358Open in IMG/M
IMNBL3_c10000586All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia36212Open in IMG/M
IMNBL3_c10166996All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola793Open in IMG/M
IMNBL3_c10167257All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae792Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
IMNBL3_c10000003IMNBL3_10000003202F066905MQEDRNCGCSCNNGGILNGMFGCGGDTEILFFIIIFLLLFTNFGCGCGRG*
IMNBL3_c10000586IMNBL3_100005865F066905MQEEVRGLGSCGCNNGCNNGILGGLFNGCGSNSTVLFFIIIFLLLFTDFGCGCNR*
IMNBL3_c10166996IMNBL3_101669961F001800MKSIFRKMAALLSMLLAAALLTAPAVAQSGANHANNWRDEDEQLAQIAELEQLHATFHAAVSVHDPVNGDSPTVITQRIRDALSIWAKDAQLTIVNTTATAGNYIGNGDPDDPANCPPPSGDTSATGQQGTLCTFFKYVSGGLQAANKFVSLSPAFKTKFVPVKDDDGQWKSSVYFECHYFDVSLNPATGQPFWTAKSHVSLDGEAKKIDGRWLLTHA
IMNBL3_c10167257IMNBL3_101672572F096286ALFDYSVKGKKVDHIRFSQAERSVVYVTVVFADRTEWSISIEPFSLPTARVSHFISIEEDPIAESGQMFLPDHPDSHPQYEEIQQPPKQRKPRKRSKK*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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