Sample 3300000146

Basic Information
IMG/M Taxon OID	3300000146 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0046785 \| Gp0053650 \| Ga0026201
Sample Name	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 54 02/08/11 120m
Sequencing Status	Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	Y
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300000146 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0046785 | Gp0053650 | Ga0026201

Sample Name

Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 54 02/08/11 120m

Sequencing Status

Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	85825843
Sequencing Scaffolds	26
Novel Protein Genes	28
Associated Families	26

Dataset Contents

Total Genome Size

85825843

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → Viruses → Predicted Viral	3
Not Available	17
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → unclassified Methylococcaceae → Methylococcaceae bacterium	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Nitrosopumilus maritimus	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote	2

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Bacteria → Proteobacteria

All Organisms → Viruses → Predicted Viral

Not Available

All Organisms → cellular organisms → Bacteria

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → unclassified Methylococcaceae → Methylococcaceae bacterium

All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Nitrosopumilus maritimus

All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote

Ecosystem Assignment (GOLD)
Name	Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Ecosystem Assignment (GOLD)

Name

Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Type

Environmental

Taxonomy

Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → coastal inlet → sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

marine biome → coastal inlet → sea water

Earth Microbiome Project Ontology (EMPO)

Free-living → Saline → Water (saline)

Location Information
Location	Saanich Inlet 54, Vancouver Island, BC, Canada
Coordinates	Lat. (^o)	48.6	Long. (^o)	-123.5	Alt. (m)	N/A	Depth (m)	120
Location on Map

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Location Information

Location

Saanich Inlet 54, Vancouver Island, BC, Canada

Coordinates

Lat. (^o)

48.6

Long. (^o)

-123.5

Alt. (m)

N/A

Depth (m)

120

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F001066	Metagenome / Metatranscriptome	788	Y
F005649	Metagenome / Metatranscriptome	394	Y
F008341	Metagenome / Metatranscriptome	335	Y
F008720	Metagenome	329	Y
F010921	Metagenome / Metatranscriptome	297	Y
F011256	Metagenome / Metatranscriptome	293	N
F015265	Metagenome / Metatranscriptome	256	Y
F018268	Metagenome / Metatranscriptome	236	Y
F028942	Metagenome / Metatranscriptome	190	Y
F031649	Metagenome	182	Y
F032623	Metagenome / Metatranscriptome	179	Y
F035963	Metagenome	171	Y
F040325	Metagenome / Metatranscriptome	162	Y
F040845	Metagenome / Metatranscriptome	161	N
F046847	Metagenome / Metatranscriptome	150	N
F047713	Metagenome	149	N
F050426	Metagenome	145	Y
F055790	Metagenome / Metatranscriptome	138	Y
F058538	Metagenome / Metatranscriptome	135	N
F066454	Metagenome / Metatranscriptome	126	N
F067831	Metagenome	125	N
F076490	Metagenome / Metatranscriptome	118	Y
F076504	Metagenome	118	Y
F096498	Metagenome / Metatranscriptome	104	N
F098058	Metagenome	104	Y
F099328	Metagenome / Metatranscriptome	103	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
SI54feb11_120mDRAFT_c1000057	All Organisms → cellular organisms → Bacteria → Proteobacteria	33263	Open in IMG/M
SI54feb11_120mDRAFT_c1004536	All Organisms → Viruses → Predicted Viral	2742	Open in IMG/M
SI54feb11_120mDRAFT_c1007426	Not Available	1891	Open in IMG/M
SI54feb11_120mDRAFT_c1008236	All Organisms → cellular organisms → Bacteria	1736	Open in IMG/M
SI54feb11_120mDRAFT_c1008512	Not Available	1685	Open in IMG/M
SI54feb11_120mDRAFT_c1009052	Not Available	1593	Open in IMG/M
SI54feb11_120mDRAFT_c1009069	Not Available	1590	Open in IMG/M
SI54feb11_120mDRAFT_c1011148	All Organisms → Viruses → Predicted Viral	1320	Open in IMG/M
SI54feb11_120mDRAFT_c1012625	Not Available	1174	Open in IMG/M
SI54feb11_120mDRAFT_c1012827	All Organisms → Viruses → Predicted Viral	1155	Open in IMG/M
SI54feb11_120mDRAFT_c1015815	Not Available	945	Open in IMG/M
SI54feb11_120mDRAFT_c1015972	Not Available	936	Open in IMG/M
SI54feb11_120mDRAFT_c1018103	Not Available	834	Open in IMG/M
SI54feb11_120mDRAFT_c1018402	Not Available	821	Open in IMG/M
SI54feb11_120mDRAFT_c1019227	Not Available	789	Open in IMG/M
SI54feb11_120mDRAFT_c1020165	Not Available	756	Open in IMG/M
SI54feb11_120mDRAFT_c1020747	Not Available	737	Open in IMG/M
SI54feb11_120mDRAFT_c1021344	Not Available	717	Open in IMG/M
SI54feb11_120mDRAFT_c1021797	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → unclassified Methylococcaceae → Methylococcaceae bacterium	706	Open in IMG/M
SI54feb11_120mDRAFT_c1022832	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Nitrosopumilus maritimus	677	Open in IMG/M
SI54feb11_120mDRAFT_c1024241	Not Available	643	Open in IMG/M
SI54feb11_120mDRAFT_c1025896	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote	610	Open in IMG/M
SI54feb11_120mDRAFT_c1026122	Not Available	606	Open in IMG/M
SI54feb11_120mDRAFT_c1026316	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote	602	Open in IMG/M
SI54feb11_120mDRAFT_c1027205	Not Available	587	Open in IMG/M
SI54feb11_120mDRAFT_c1032567	Not Available	509	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
SI54feb11_120mDRAFT_c1000026	SI54feb11_120mDRAFT_100002624	F099328	MIQAGTAEVCFVFLSRRIFRGEDLRAAIISQARRALFK*
SI54feb11_120mDRAFT_c1000057	SI54feb11_120mDRAFT_10000572	F011256	MSLTNIFGAVVLLAVGLVILLHPDKFRYSSKQIKQFIFRYWWISVFVLLGYVTMGEWEHLIITQESHSNIMKE*
SI54feb11_120mDRAFT_c1004536	SI54feb11_120mDRAFT_10045361	F046847	MADEQTEQVETPKTENEVVISQSKLDKLIDKGFSKGANRAKTELADILGVDSIEQARELINAKRETDEANKSDLDKAAELIQTLNSTIDGLESNNKMMVADMAVQKVVTENGIK
SI54feb11_120mDRAFT_c1007426	SI54feb11_120mDRAFT_10074261	F067831	MKLNYFNFNNYSSSIATQSLQAAAPFLTGSNPEYWTGKGNNHGVIAGYDWVPSSGSLKLLELNTNIQTPPETNFLDSAVTWWKANNYDTIVLVTRNEEGTVIPSLNLVGDITASLDIDGFTSSIYVQPSYPTPVPDFDVPNTTFVLRFGFDSASPIDYLASDKREFRNFASSSGIESLMPRKMADLPDGFSNGVGVPDVLIKDPTVDYQTLLMNSFQFYDITDDNKNYLLSQSYCEEFILPDLNYNGAYYSEVRGIMMLTPQENIFLQPRNPITADVNVFQTHLPHYILSGDSGSYTTTTITRKGAISG
SI54feb11_120mDRAFT_c1008236	SI54feb11_120mDRAFT_10082361	F040845	LMLKIYGQSWGVNMGKVFSGINKGKPTMIKKGLKEIKILNKKIEEMIEDLV*
SI54feb11_120mDRAFT_c1008512	SI54feb11_120mDRAFT_10085123	F031649	MNNFKEKTKNALMGLVLIAMLYMITVIMFILDGAPFHG*
SI54feb11_120mDRAFT_c1009052	SI54feb11_120mDRAFT_10090522	F031649	MEKVKNMLMGLVLVAMMYMLLVIAFILDGAPFHP*
SI54feb11_120mDRAFT_c1009069	SI54feb11_120mDRAFT_10090693	F076504	MARNWYGNKRIIKEDLYTKKRVTDSDVRSEYWKMVLWILIGYLFFHFIIMGWTI*
SI54feb11_120mDRAFT_c1011148	SI54feb11_120mDRAFT_10111485	F032623	WSRILTMTENIWIWVLIYSMPLTAVIWFLGMWATHEDYKKEHNIKGWSDKEMNAKQIILTSIVSTIVGTTGWLGGVYYGSANMFETIYDNVGNELDLLGKKLDSESTKKIESQIEQLKQRVLNKVPSQQDIIDMSAQVDEINERIVVLASETQGLISDLKYSVREDLNKTTTDLTNTVESSITAQSDSVKKEIGKLYDKVDVLYKELTEVTTIIDKAKNTFFGKSVFKEKK*
SI54feb11_120mDRAFT_c1012625	SI54feb11_120mDRAFT_10126251	F096498	MGMYDEINVDIKCPKCGSNEMNWQSKDYMCGLDMIDPDKVQKFYTHCDKCDTFITYRRGTENDEEVIKCRAEPYSLDEVEKMGFKYKCD
SI54feb11_120mDRAFT_c1012827	SI54feb11_120mDRAFT_10128271	F076490	VSRTNYSTLGNFFEFDEDDLEFERVTNNIDTVDIDYGVEVIFKYYRKHGFPHYKIREDEKHSHMRKLRKFDTTTIFEDKKIIQTMH
SI54feb11_120mDRAFT_c1013954	SI54feb11_120mDRAFT_10139543	F066454	MSIRLDVLILINSGVTDRSEIVERLGINIRSVSNCFRFLIKEGWVEYSREPVSAVGSVGYRITQVGIDKIKASTVDEYRQSPKRKIPDYEVMRSHL
SI54feb11_120mDRAFT_c1015815	SI54feb11_120mDRAFT_10158152	F047713	MEMIGQGEVAALEIVKDMFGGACEYLTQVKLSTMVTEEYLETFSERQLKETIDIVVITPFDYLAIRVQDKHHSSARMATIDNIQKLMLEWNGWVLVDVWHYECKELWKDKVNKRSRLEXEMAIKESSIE*
SI54feb11_120mDRAFT_c1015972	SI54feb11_120mDRAFT_10159721	F008341	SETLRKIVVETLVPANFNFMARDLDGSVHVFENEPNLDYGTNKNPLPCDMWDDPSGGNTRPVSFKTDTADGDFTEELGDWRDSCVEITGGN*
SI54feb11_120mDRAFT_c1018103	SI54feb11_120mDRAFT_10181031	F018268	AKVEFEYPTIEGMIYKDTIIVCEESDFNSRVGAEKVKGKLDTGKIVWIPRKLLQKV*
SI54feb11_120mDRAFT_c1018402	SI54feb11_120mDRAFT_10184021	F028942	ALVKKYLKRGEFQENATVWELWRMAERKVDKKTMSMIIKDYMDGMEKVIKKNIDTFENAMLSYAKKRSTDLSWDEQVVNNIKVKTAHFFKLPLKIAQTDDQIEMSEKQQELMEFAKSKKWSIKMWDVAIDLEAYTRAVAKKELGK*
SI54feb11_120mDRAFT_c1019227	SI54feb11_120mDRAFT_10192273	F005649	LMIIVKKIFGVHKYGAVIGNRQMLFNNRVQQSLSKTRKKRLNNQNSDKSLAGLVIDWHLANTEMGFDNFVEPMISDYQPTYANA*
SI54feb11_120mDRAFT_c1020165	SI54feb11_120mDRAFT_10201651	F050426	IKIDDSEYLNESVKRLTEKIKQLKTSYAWRWGNTHDQEKEIVKGMILQSLGLSQMEEKENGNS*
SI54feb11_120mDRAFT_c1020747	SI54feb11_120mDRAFT_10207471	F028942	RKTLKICLTLWLRNISKVDALVKKYLKRGEFQENATVWELWRMAERKVDKKTMSMIIKDYMDGMEKVIKKNIDTFENAMLSYAKKRSTDLSWDEQIVNNFKVKTAHFFKLKLKIAQTEKEASLYPEHQELMEFAKSKGWKVKVWDAPIELEIYTREVAKKELGK*
SI54feb11_120mDRAFT_c1021344	SI54feb11_120mDRAFT_10213442	F040325	MARRKIGNSHTTICVSWEDKELFRKFAQFVKKTRTGDLYESDAVLFAKMLNHFKNNNNMGDKPNTTYPSKS*
SI54feb11_120mDRAFT_c1021797	SI54feb11_120mDRAFT_10217971	F058538	MYSQYETTVINRRRLHDILNWVNQKYHLEYEVVQKNRDVFYVIFHDLNIKQTVAIQKQIKGIAQPEHFDMH*
SI54feb11_120mDRAFT_c1022832	SI54feb11_120mDRAFT_10228321	F015265	SIFPDFITKSSNMYPDQMTKNPKLIETNAIVSLNNVGLPVFLNPIYDIIPMASPTKNPTXLSIFSNKNSNGV*
SI54feb11_120mDRAFT_c1024241	SI54feb11_120mDRAFT_10242412	F035963	IAITSGLLGIGLWIFKRLFKSIDLAHERIDRLESKVVDRAYLESQLVPIRQDLKIILKHLLGTKK*
SI54feb11_120mDRAFT_c1025896	SI54feb11_120mDRAFT_10258962	F098058	GTNFKVHFTIRAQKVHEQMAVYTGGVGTSTAASVLNSIDGWGDGLELGTGNYKDGFFFASVYNNTDSDRDDQVIVFSDQNNASTVTLDFNGNAFKHRDDPDDPDTEVAILNEESLANAYSNGDFTLLTSV*
SI54feb11_120mDRAFT_c1026122	SI54feb11_120mDRAFT_10261222	F010921	MALNAKGGVKIIEGKAYIHPLSIQEIEFLLNLLANTEHKGSELQKVMQVTYKLR
SI54feb11_120mDRAFT_c1026316	SI54feb11_120mDRAFT_10263162	F008720	MKVIQTEDTSFVRDLHSKALINTDRVALENHRKRKQIEIQQAQKWQQMETKVEELNNVRNEILEIKSLLQEVLNKKEL*
SI54feb11_120mDRAFT_c1027205	SI54feb11_120mDRAFT_10272051	F055790	TVGVAAADTYMIGIEIGKMEGFELPNFMKNGQLGYNHNAAGFGDSY*
SI54feb11_120mDRAFT_c1032567	SI54feb11_120mDRAFT_10325671	F001066	MDKNDKIFKIKPIGNKNIVVEDKRKTISPFNSAKHFKDANIPALCDQCAYRSIDGGGNGKXPXYEEGAVCGIRKDFISFINELDTRNPEDLKGMIDMVAKLTFENVLMTLTQAKFDGNVPDRNSKSEINTLLNIVKSMNDLNSK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300000146: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 54 02/08/11 120m

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences