NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300000200

3300000200: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 48 08/11/10 150m



Overview

Basic Information
IMG/M Taxon OID3300000200 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0046785 | Gp0053419 | Ga0025993
Sample NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 48 08/11/10 150m
Sequencing StatusDraft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size64731131
Sequencing Scaffolds36
Novel Protein Genes39
Associated Families34

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses1
All Organisms → Viruses → environmental samples → uncultured Mediterranean phage1
All Organisms → Viruses → Predicted Viral4
Not Available20
All Organisms → cellular organisms → Archaea5
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon2
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium1
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMarine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biomecoastal inletsea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationSaanich Inlet 48, Vancouver Island, BC, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)N/ADepth (m)150
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004439Metagenome438Y
F005649Metagenome / Metatranscriptome394Y
F005685Metagenome / Metatranscriptome393Y
F017149Metagenome / Metatranscriptome242Y
F027418Metagenome194Y
F029271Metagenome / Metatranscriptome189N
F032623Metagenome / Metatranscriptome179Y
F033601Metagenome / Metatranscriptome177Y
F035724Metagenome171Y
F040845Metagenome / Metatranscriptome161N
F043443Metagenome / Metatranscriptome156Y
F048788Metagenome147Y
F051972Metagenome143N
F052275Metagenome / Metatranscriptome143Y
F055790Metagenome / Metatranscriptome138Y
F058066Metagenome135Y
F058917Metagenome / Metatranscriptome134Y
F059474Metagenome / Metatranscriptome134Y
F061863Metagenome / Metatranscriptome131Y
F062162Metagenome131Y
F063751Metagenome129N
F067831Metagenome125N
F068674Metagenome / Metatranscriptome124Y
F068917Metagenome124N
F072238Metagenome121N
F075397Metagenome / Metatranscriptome119N
F076495Metagenome118N
F081759Metagenome114Y
F083345Metagenome113N
F089529Metagenome / Metatranscriptome109N
F091863Metagenome107N
F095609Metagenome / Metatranscriptome105N
F097479Metagenome104Y
F105205Metagenome / Metatranscriptome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
SI48aug10_150mDRAFT_c1001276All Organisms → Viruses4069Open in IMG/M
SI48aug10_150mDRAFT_c1001665All Organisms → Viruses → environmental samples → uncultured Mediterranean phage3413Open in IMG/M
SI48aug10_150mDRAFT_c1002785All Organisms → Viruses → Predicted Viral2385Open in IMG/M
SI48aug10_150mDRAFT_c1003375All Organisms → Viruses → Predicted Viral2083Open in IMG/M
SI48aug10_150mDRAFT_c1005073All Organisms → Viruses → Predicted Viral1511Open in IMG/M
SI48aug10_150mDRAFT_c1005098Not Available1505Open in IMG/M
SI48aug10_150mDRAFT_c1005251All Organisms → cellular organisms → Archaea1479Open in IMG/M
SI48aug10_150mDRAFT_c1005651Not Available1397Open in IMG/M
SI48aug10_150mDRAFT_c1005961All Organisms → Viruses → Predicted Viral1345Open in IMG/M
SI48aug10_150mDRAFT_c1006270All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon1298Open in IMG/M
SI48aug10_150mDRAFT_c1007941All Organisms → cellular organisms → Archaea1090Open in IMG/M
SI48aug10_150mDRAFT_c1009536Not Available964Open in IMG/M
SI48aug10_150mDRAFT_c1009932Not Available936Open in IMG/M
SI48aug10_150mDRAFT_c1010074Not Available929Open in IMG/M
SI48aug10_150mDRAFT_c1010496All Organisms → cellular organisms → Archaea905Open in IMG/M
SI48aug10_150mDRAFT_c1010909Not Available884Open in IMG/M
SI48aug10_150mDRAFT_c1011244All Organisms → cellular organisms → Bacteria868Open in IMG/M
SI48aug10_150mDRAFT_c1011896Not Available839Open in IMG/M
SI48aug10_150mDRAFT_c1014037All Organisms → cellular organisms → Archaea759Open in IMG/M
SI48aug10_150mDRAFT_c1014337All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium750Open in IMG/M
SI48aug10_150mDRAFT_c1014756Not Available737Open in IMG/M
SI48aug10_150mDRAFT_c1015218Not Available725Open in IMG/M
SI48aug10_150mDRAFT_c1016226Not Available697Open in IMG/M
SI48aug10_150mDRAFT_c1016631All Organisms → cellular organisms → Archaea688Open in IMG/M
SI48aug10_150mDRAFT_c1017001Not Available680Open in IMG/M
SI48aug10_150mDRAFT_c1018768Not Available641Open in IMG/M
SI48aug10_150mDRAFT_c1020791Not Available604Open in IMG/M
SI48aug10_150mDRAFT_c1021258All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon596Open in IMG/M
SI48aug10_150mDRAFT_c1021364Not Available595Open in IMG/M
SI48aug10_150mDRAFT_c1023123All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium568Open in IMG/M
SI48aug10_150mDRAFT_c1024717Not Available547Open in IMG/M
SI48aug10_150mDRAFT_c1025435Not Available538Open in IMG/M
SI48aug10_150mDRAFT_c1026116Not Available530Open in IMG/M
SI48aug10_150mDRAFT_c1027011Not Available519Open in IMG/M
SI48aug10_150mDRAFT_c1027499Not Available514Open in IMG/M
SI48aug10_150mDRAFT_c1027508Not Available514Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
SI48aug10_150mDRAFT_c1001276SI48aug10_150mDRAFT_10012761F048788MKMENNYWIVDDWLIFKPKFNEELTDYYVIINQYKKIMFSDYNNPLISIETNNQYTDEYQTDTVFNIFNKKMDLSNNINLTY
SI48aug10_150mDRAFT_c1001665SI48aug10_150mDRAFT_10016651F068917SNFDSQIRVKFIKRVLRNGKPLKESVNEKISKEEWSEYPKYARKLKPYMRRLLKIPVKVRVIKQANHNPWIDVRVARSGKDVIPNDFRKRALKVIGGGRARDMDNINYGNIRTGSVSLKYDEWVKLLGNKVK*
SI48aug10_150mDRAFT_c1002785SI48aug10_150mDRAFT_10027853F051972MASPIYYFTRSGCAWCTRMQPSIEHINKTLNDEQKIQILNVDDKKSRVIYDTILTSNKLRAITPMLYNSNIGTFLLGYQDKRNVEQFLKANPLKERKPLKPIPTFDIQNSSKKDFDNWKKSVILWYGENQKDLPTNVISQERMIDMVYTQFMAYRTKPLTIEDRLSKLEEQSHEPQNYREECKMMNXELKILKLQIKKLKRLK*
SI48aug10_150mDRAFT_c1003375SI48aug10_150mDRAFT_10033754F005649AEWYRQMLFNNRVQQSLSKTRKKRLNNQNSDKSLAGLVIDWHLANTEMGFDNFVEPMISDYQPTYANA*
SI48aug10_150mDRAFT_c1005073SI48aug10_150mDRAFT_10050734F081759IYGEDKNITLGVVDVPIEKQISIDKASTQGLTSETYENNNENKLDKLRKLRRGN*
SI48aug10_150mDRAFT_c1005098SI48aug10_150mDRAFT_10050981F067831MKLNYFSFNNYSSSIVTQSLQAAAPFLTGSNPEYWSGKGDNYGVIAGYDWVPSSGSLKLLELNTNIQTPPETNFLDSAVTWWKANNYDTIVLVTRNEEGTVIPSLNLVGDITASLDIDGFTSSIYVQPSYPTPVPDFDVPNTTFVLRFGFDSASPIDYLASDKREFRNFASSSGIESLMPRKMADLPDGFSNGVGVPDVLIKDPTVDYQTLLMNSFQFYDITDDNKNYLLSQSYCEEFILPDLNYNGAYYSEVRGIMMLTPQENIFLQPRNPITADVNVFQTQLPCYILSADSGSYTTTTITRKGAMSGSQVLMS
SI48aug10_150mDRAFT_c1005251SI48aug10_150mDRAFT_10052511F063751SGPEEYASIMANELRDDTPPLAPKQRMYGIHGFHRKQEYTIPPETSNFHSTSETLIKPTTPPEGTKSGGIDPTPEPGSKEMGSASGYRQVQKGGQSIFAKNEKLWGKWVDHRIGGRVDSREWKGNKLVDLLPKGKK*
SI48aug10_150mDRAFT_c1005651SI48aug10_150mDRAFT_10056512F017149PRNVTDNKQFDGWKQGNEKYKSAKDVVGYWNFDNVVGDMVIDKSGNDNHAKIHGALQKEKELRIGSLALIPNRRDGKFTCLEHEENGWSQTKFTHWETRENQLRFFNKVRRGLSSIKEDGLSSLKYEISHNEEFLDKHEFISVI*
SI48aug10_150mDRAFT_c1005961SI48aug10_150mDRAFT_10059611F032623LVAGWSRILTMTENIWIWVLIYSMPLTAVIWFLGMWATHEDYKKEHNIKGWSDKEMNAKQIILTSIVSTIVGTTGWLGGVYYGSANMFETIYDNVGNELDLLGKKLDSESTKKIESQIEQLKQRVLNKVPSQQDIIDMSAQVDEINERIVVLASETQGLISDLKYSVREDLNKTTTDLTNTVESSITAQSDSVKKEIGKLYDKVDVLYKELTEVTTIIDKAKNTFFGKSVFKEKK*
SI48aug10_150mDRAFT_c1006270SI48aug10_150mDRAFT_10062703F091863TYWKGRTKPNYPKKTNGKTTDGDWDRNCPDCNKVLYYSSKWGRDDAERNGRICNQCSAYKYKKSWNNVITDDHIKKMRATKAGFTSWEEYKQKYPSKKMYQNEVRRLTRKQPLHILPNYSKLEENWGKMGEDGAYQIDHIISINKGWKDMIPAEEIANITNLQVMKWEDNLRKH*
SI48aug10_150mDRAFT_c1007941SI48aug10_150mDRAFT_10079411F068674RGNRGWSDRSVWSIDTWLVDNLTPMLERLKNNKLGTPVTMFRKKDGVDKDGNSTDEADRLAEQRWENVLSEIIYGLKCAKAIQNYDYEDKEEVKKLTKSSQRSFELIGKHLFNLWD*
SI48aug10_150mDRAFT_c1008752SI48aug10_150mDRAFT_10087521F027418FGWKFNQEIFIPLNIKSLNMCCCNNQYLIDNLHNNVEELTIVQTNLNLDNLPNSIKKICINNYNEELNNFPNSIEYLELTNYKLKIKKIPKNLKTVKCGKKYQYIDDFKDYEVITY*
SI48aug10_150mDRAFT_c1009536SI48aug10_150mDRAFT_10095361F075397LDQESQAAELKDDDNAEELAFLIAENGDEYWNLDLFMRTESGRYDGVMGLTNTSAIGIVLSCSGESAVIQCFG*
SI48aug10_150mDRAFT_c1009932SI48aug10_150mDRAFT_10099321F072238LDIDLPTVKNDGNSTNNTKLIKWIEKRTGKDFSYLYNKGQKEYQYDYKFVMAAYEYLDSINVDETWDLQSRLSKDVIPNLSSLSLMYDPPESKTNKYHLMSDKINEVILKNLIDEFPYMCNSLDDIRWKTNEWFGHMIAMPKGGFMSIHRDGTDGRPFTILNYINTDRTLEDGGVYRYYIHKDYDVEDKESLDWSKYPDYIYYKPVPQEDVENVKSLRYKYHNPPNKTPEYLESLDIFKNHNQYTIVPNYTTVNVMLHLNQKTREEDKKYYVLETPPSSDFEGEQGIPHLVTKNKSDEVRYTLYRRVEWRDS
SI48aug10_150mDRAFT_c1010074SI48aug10_150mDRAFT_10100742F035724MGEWGNAMRFDYPTVVSATTSLVFNNNPESPYEREVIKHNSSVQMEDGSMFIYSRSVTNYRYSISVVLTSESERDALESFYDSTVNGAEKTFEYTDPYGDVYTVRFDENMRISEIYKDRLYRATFTLLQTA*
SI48aug10_150mDRAFT_c1010496SI48aug10_150mDRAFT_10104961F105205KEIRLMRCKICEIPHKNTGKYDLWLEHKVCRVCGSLFDLFSWNGNYLVEYWRSGK*
SI48aug10_150mDRAFT_c1010909SI48aug10_150mDRAFT_10109093F033601YIGSVVHINNENWRVAERIFRYGREWQYTLSHENTDGTYKSINLNETALENIIESGSRVMGEIK*
SI48aug10_150mDRAFT_c1011244SI48aug10_150mDRAFT_10112441F040845TEFERIGVELGKLYTDKDRPAFKTPAQIKEDKLNEMDDDKRAFLMLKIYGQSWGVNMGKVFSGINKGKPTMIKKGLKEIKILNKKIEEMIEDLV*
SI48aug10_150mDRAFT_c1011896SI48aug10_150mDRAFT_10118962F029271EINSILLITPFNGGFEVITIVINSILTVKKGYIMSKLSDLQXIKXLLDVDFRKDKFLENSYNNSPCFGYDTAESYVANIHQFLSEKYGEAVIYNFMQEVESLRITTLKMYIESNIAAYRRFGAQK*
SI48aug10_150mDRAFT_c1014037SI48aug10_150mDRAFT_10140372F062162MEEKYWGEKNSPVKKAVNNKEITEKHIAVHENKIYYYAGVNRESAAELNKKIGELQV
SI48aug10_150mDRAFT_c1014337SI48aug10_150mDRAFT_10143371F083345EDVPDEIKDKAKGNTWEVSDEDADALLQIGAVSMIKKGLKVAEEEDYYAKLQKLADTDEWESDDDKEGM*
SI48aug10_150mDRAFT_c1014756SI48aug10_150mDRAFT_10147561F004439TDGDGVRNIAKLQGKKKQISAFFSMFSRYMEVGVATQGGVHSVLEMDADVLLSAKGDVMSHLDQNGRRWTSISDLKETSRWTKFTAVEKDLEKMFDALVKKYLKRGEFQENATVWELWRMAERKVDKKTMSMIIKDYMDGMEKVIKKNIDTFENAMLSYAKKRSTDLSWDEQVVNNIKVKTAHFFKLPLKIAQTDDQIEMSEKQQELMEFAKSKKWSIKMWDVAIDLEAYTRAVAKKELGK*
SI48aug10_150mDRAFT_c1015218SI48aug10_150mDRAFT_10152183F055790VGVAAADTYMIGIEIGKMEGFELPNFMKNGQLGYNHNAAGFGDSY*
SI48aug10_150mDRAFT_c1016226SI48aug10_150mDRAFT_10162262F052275LSTTSKYKCHSCGYTAEVWDEPDKAPIATVDTRHCLGCKSLVEVPIEFHGGGLIEDPDVVPSFLNRCPDCNSSNVQSWDTKHSCPRCGEHMTSELAN*
SI48aug10_150mDRAFT_c1016631SI48aug10_150mDRAFT_10166312F068674RGNRGWSDRSVWSIDTWLVDNLTPMLERLKNNKLGTPVTMFRKKDGVDKDGNSTDEADRLAEQRWENVLSEIIYGLKCAKAIQNYDYKDKEEVKKLTKSSRRSFELIGKHLFNLWD*
SI48aug10_150mDRAFT_c1017001SI48aug10_150mDRAFT_10170011F005649QSLSKTRKKRLNNQNSDKSLAGLVIDWHLANTEMGFDNFVEPMISDYQPTYANA*
SI48aug10_150mDRAFT_c1018768SI48aug10_150mDRAFT_10187681F027418VKEIFIPLNVKSLNMCECNNQYVIDNLRNNVEELIISNNHLNLDNLPNSIKKLYIEDYEKELNNLPNSIEYLELNNYELKIKKIPKNLKTVKCNKEYKYINDFKNYEVITY*
SI48aug10_150mDRAFT_c1018768SI48aug10_150mDRAFT_10187682F048788MTNNYWIVDEWLIFKPEFNEELTNYYGVINKYKKIMFSNYNDPLIAIETNNQYKNKYFNNYIESKFSQEINLSNNINLTHLTFGFYF
SI48aug10_150mDRAFT_c1020791SI48aug10_150mDRAFT_10207913F058066NVLAAQRWDNVLNEIIYGLKCAKKLQDMDYDYKDKEEAKKLTKSSRRSFDLIGEHLFDLWN*
SI48aug10_150mDRAFT_c1021258SI48aug10_150mDRAFT_10212581F043443VNDKLLKLKRKKLQQQILYLRTELEETEWIFQDCLKEFDVEFRKYFKDPTQKKKGDVTTDSPEYDIPEKDVNMVFKKIAKETHPDKLINKDISDEEYDAKVDMYKEAQRXVKNR
SI48aug10_150mDRAFT_c1021364SI48aug10_150mDRAFT_10213641F005685NKVLNMRTSSMKKFNEYSSFEDKILITLDRCPCDLLTLSHKLKEDIMPVSSMLEHLKVYDKVEMYREKWQIKKQKK*
SI48aug10_150mDRAFT_c1023123SI48aug10_150mDRAFT_10231233F097479VSFKYITDGADEQAHEDWEANLADGIEVFKDKVLSEIKR*
SI48aug10_150mDRAFT_c1023962SI48aug10_150mDRAFT_10239621F027418LTHLTFGKNFNQEIFISFNVKSLNMKCCNNQYMMDNLHNNIEELTIVQTNLNLDNLPNSIKKIYINNYDKELNNLPNSIEYLELKYYKFKIKKIPKNLKIIKCNKGYKYIDDFKNYTVITY*
SI48aug10_150mDRAFT_c1024717SI48aug10_150mDRAFT_10247172F059474MAFKAIDRNDTKEFVSSEDPAIDIANSDIEAYKESHDIKHLSFKDGESPTVFHMGTITFMKFAEIKDKHISFDLGSDGQEINTNLFGLTADSLRHSLKKADNLPFPIKIERGRLSDTTMDKLARLGIVEELGNIALNLNGFGD
SI48aug10_150mDRAFT_c1025435SI48aug10_150mDRAFT_10254352F076495FGLCKNRLERNRMKTFKEHVKFQKITVKDKSGKSHTTQARIRPNITHIALIHYKALSATNLSSAVDAHTDLSFGSEDSLSKVINHAKKRYGKDITGIEIQKIDNKYL*
SI48aug10_150mDRAFT_c1026116SI48aug10_150mDRAFT_10261161F061863IIMKIDTNLLIQTSIAACLVIFGVVTKNSFEQLGFPNHPIGKPLGMGMFIMGWIYIAYIFSINKPNKLAFILPSIGIVIAVMMMKQYMVKKQTPPMVFPVIFALSWIILGLNAGNHLSGNQKYLGLFASFLVLLSMMQILPYQRTHNIVDGPGQPLFVIAWGILIMLNSNR*
SI48aug10_150mDRAFT_c1027011SI48aug10_150mDRAFT_10270111F095609MNVTEHKNIENVIRYFLLFLPPRGRRSILDIGSGVNCPYKGVLKGRLGIGGEYRALDIRGAPPKVDHVMDLTKGSHFEDNHWEWGWCSEVIEHIDPDKKKIFVNEAIRICENIVFTFPTPKLKEVFYDDPGHTEVKINFEEEYSHSYQIT
SI48aug10_150mDRAFT_c1027499SI48aug10_150mDRAFT_10274992F089529MQKSKKPLHLESIESNPTSGIXTGSVKSAITKDGEHIYVSKGEQIPYEDGFRVCVGQERVPGEITSTYSHISQERWDAIFGNKGK*
SI48aug10_150mDRAFT_c1027508SI48aug10_150mDRAFT_10275082F058917MDKLLKALEKESKDIRSADMVVNGKIHQIYYRIMSGDDHARALELSKKTKNIKETDGSTTELTYYDDDLLRCHIIYFQLLDKDGSRVFTDLPKIQWIKDNITYETASYLAAVMGLKSVSDIVEEQQEA

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