NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300000285

3300000285: Human fecal microbial communities from Cork, Ireland - EM251



Overview

Basic Information
IMG/M Taxon OID3300000285 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0045762 | Gp0054282 | Ga0010827
Sample NameHuman fecal microbial communities from Cork, Ireland - EM251
Sequencing StatusPermanent Draft
Sequencing CenterBeijing Genomics Institute (BGI), Macrogen
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size67176415
Sequencing Scaffolds8
Novel Protein Genes8
Associated Families6

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Herelleviridae → unclassified Herelleviridae → Herelleviridae sp.1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Hungatella → Hungatella hathewayi1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Fecal Microbial Communities From University College Cork, Ireland, Of The Elderly Irish Population
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From University College Cork, Ireland, Of The Elderly Irish Population

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationCork, Ireland
CoordinatesLat. (o)51.907Long. (o)-8.472Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029444Metagenome188Y
F042737Metagenome / Metatranscriptome157Y
F051936Metagenome143N
F056682Metagenome137Y
F066905Metagenome126Y
F067844Metagenome125N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
EM251_1000038All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Herelleviridae → unclassified Herelleviridae → Herelleviridae sp.89890Open in IMG/M
EM251_1004056All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium10280Open in IMG/M
EM251_1005767All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes9539Open in IMG/M
EM251_1006237All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales2814Open in IMG/M
EM251_1011931All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales645Open in IMG/M
EM251_1012134All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Hungatella → Hungatella hathewayi24590Open in IMG/M
EM251_1015154All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides6744Open in IMG/M
EM251_1016907All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales4120Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
EM251_1000038EM251_100003847F042737MKLTEKSQIVFEYLKNNGGKVSIEELANATGRSARSVGANVLDLTKKGLVVREKEEVEGAEKPVAYAILTDAGKTFVPSDDAE*
EM251_1004056EM251_10040562F066905MPEESRDCGCGRNNGCGCLGNLFGGCGCGDSSILFFIIIFLLLFCNCGGNR*
EM251_1005767EM251_10057673F056682MKMQSRAGKVANQSIAQGETNFTSFRAFPSKNRVSFPIQELGKIHENQEVL*
EM251_1006237EM251_10062374F056682MKTQSRAGKAANQPIGQDKMYSASFVAFPSKNRITFPIQELGKIHENQEVS*
EM251_1011931EM251_10119312F029444MGVSEQLTGFEPEDLMSWTVSNLQRPFREDFSLEKSGIIAEKESQIFGRRFVGFDGPKKAAPFFNF*
EM251_1012134EM251_10121346F067844MNTLATETASAWYLILNRKRPPKKVILPIFNATQFSPHLPRTPDDGDIPVSAGAAVITPQRRFTRAPQGSPQALGGREEVSLSPHAVIA
EM251_1015154EM251_10151546F051936AFGFSVLQEHAVMTPVINIFFAVLIIRYLSIHISIKK*
EM251_1016907EM251_10169073F056682QNTMKTQSRAGKAANQPIRQGEIYSASFGAFPSKNRSTFPIQKLGKIHENQEVL*
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