Sample 3300000303

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300000303

3300000303: CECUM_9-2

Overview

Basic Information
IMG/M Taxon OID	3300000303 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0070986 \| Gp0052895 \| Ga0011199
Sample Name	CECUM_9-2
Sequencing Status	Permanent Draft
Sequencing Center	University College Cork
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	80998730
Sequencing Scaffolds	2
Novel Protein Genes	2
Associated Families	2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Chicken Cecum Microbial Communities From Ireland
Type	Host-Associated
Taxonomy	Host-Associated → Birds → Digestive System → Ceca → Unclassified → Chicken Cecum → Chicken Cecum Microbial Communities From Ireland

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal proximal gut

Location Information
Location	Ireland: Cork
Coordinates	Lat. (^o)	51.897783	Long. (^o)	-8.470613	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F011632	Metagenome	288	Y
F053097	Metagenome / Metatranscriptome	141	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Cc92DRAFT_1006006	All Organisms → Viruses	11287	Open in IMG/M
Cc92DRAFT_1025399	All Organisms → cellular organisms → Eukaryota → Opisthokonta	718	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Cc92DRAFT_1006006	Cc92DRAFT_10060067	F053097	MFDIKGDKIVFSTQDLAIPPFKEFYNNAKDKNLAKKQLEYVIWRYKWNTPYEAYPESERSERVALDVFGTNYEPDASVKELIKRFNEF*
Cc92DRAFT_1025399	Cc92DRAFT_10253993	F011632	VLI*KGGQAREWAAQRGGAVTDPGGGQRAFGCCAEGHGLARTIGEGRMVGLDDPVGLFQP

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