NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300000353

3300000353: Hot spring microbial communities from Elkhorn Slough, Monterey Bay, USA - MD6A



Overview

Basic Information
IMG/M Taxon OID3300000353 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0067861 | Gp0054045 | Ga0026171
Sample NameHot spring microbial communities from Elkhorn Slough, Monterey Bay, USA - MD6A
Sequencing StatusDraft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size178522206
Sequencing Scaffolds5
Novel Protein Genes6
Associated Families6

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria1
All Organisms → cellular organisms → Eukaryota1
All Organisms → cellular organisms → Bacteria1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSaline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline Mat → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biome → hot spring → microbial mat material
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationElkhorn Slough, Monterey Bay, California, USA
CoordinatesLat. (o)36.82188Long. (o)-121.744Alt. (m)N/ADepth (m)N/A
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011397Metagenome / Metatranscriptome291Y
F022996Metagenome212Y
F036294Metagenome / Metatranscriptome170Y
F082762Metagenome / Metatranscriptome113Y
F082899Metagenome / Metatranscriptome113Y
F102160Metagenome102Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
ElkS_mat_MD6ADRAFT_1000012Not Available50233Open in IMG/M
ElkS_mat_MD6ADRAFT_1000032Not Available41560Open in IMG/M
ElkS_mat_MD6ADRAFT_1012526All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria2098Open in IMG/M
ElkS_mat_MD6ADRAFT_1015579All Organisms → cellular organisms → Eukaryota1738Open in IMG/M
ElkS_mat_MD6ADRAFT_1024203All Organisms → cellular organisms → Bacteria1144Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
ElkS_mat_MD6ADRAFT_1000012ElkS_mat_MD6ADRAFT_100001281F022996METKIITNIAKMKADIKVKAEEQKFLKNQRKDVNLVGERKMSASDATYKHQCNREELRMMYAAYGLARGKSIKQIENQHDEENHPLKQYQKTIDRIMEGYMKIVEVEPQE*
ElkS_mat_MD6ADRAFT_1000012ElkS_mat_MD6ADRAFT_100001290F011397MKDFELLKRTYPVSQFDRICDGYVYICDNTSVEERKEWRINLKDLQKTIKKGEKYIYQVAKDSGMFKAMCLSFNNYRIIRKHIFGIDDE*
ElkS_mat_MD6ADRAFT_1000032ElkS_mat_MD6ADRAFT_100003238F102160MILFALMVSVFISYVAYIIFKYGIQKSISESYYVLPKKLNFLFVLFTWLFAIPAMFLGNSLLMFFAGGGIVWVGANAAMHKNPTRTIHLIAAIGGMILGGLAMIFQYHMWYMTAGVAGLLPILYLVDKKHFMFWAELAVFIAITITLGVNIF*
ElkS_mat_MD6ADRAFT_1012526ElkS_mat_MD6ADRAFT_10125263F036294MDRGSSDEAIVGVKPTADDDAVTYRRGKLLESDKEVGAEGRNM*
ElkS_mat_MD6ADRAFT_1015579ElkS_mat_MD6ADRAFT_10155793F082762MLGLFTESLTYLFPGGRTLKLIKNGVSVTNSSNPVVLAKNITLTVVDCCAPPPLRLAAHCIAAGATIAASIAAPNPVTLGSAVHLVTELYENC*
ElkS_mat_MD6ADRAFT_1024203ElkS_mat_MD6ADRAFT_10242031F082899MSSFDEVLDQAIALLRQRRRITYRGLKRQLRIDDEFLDDIVDELIKGQRLAEDE
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.