Sample 3300000513

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300000513

3300000513: Tailings pond microbial communities from Northern Alberta - Syncrude Mildred Lake Settling Basin

Overview

Basic Information
IMG/M Taxon OID	3300000513 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0047444 \| Gp0054484 \| Ga0011563
Sample Name	Tailings pond microbial communities from Northern Alberta - Syncrude Mildred Lake Settling Basin
Sequencing Status	Permanent Draft
Sequencing Center	McGill University
Published?	Y
Use Policy	Open

Dataset Contents
Total Genome Size	11176345
Sequencing Scaffolds	3
Novel Protein Genes	3
Associated Families	3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	1
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Hydrocarbon Resource Environments Microbial Communities From Canada And Usa
Type	Engineered
Taxonomy	Engineered → Wastewater → Industrial Wastewater → Petrochemical → Unclassified → Hydrocarbon Resource Environments → Hydrocarbon Resource Environments Microbial Communities From Canada And Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Location Information
Location	Fort McMurray in northeastern Alberta, Canada
Coordinates	Lat. (^o)	57.01116	Long. (^o)	-111.6	Alt. (m)	N/A	Depth (m)	0 to .1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003471	Metagenome / Metatranscriptome	485	Y
F041590	Metagenome	159	N
F090293	Metagenome / Metatranscriptome	108	N

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Draft_100950	All Organisms → Viruses → Predicted Viral	2078	Open in IMG/M
Draft_103736	Not Available	1127	Open in IMG/M
Draft_104702	Not Available	955	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Draft_100950	Draft_1009501	F090293	PVLDLFVNYGNLDLSMQMQRPAESGLFFNLVNRSSTMSERTPTAKRSIAPVTVTVEITATRINENGTLSGITAKVVKQPIKGNEFKTSVPPMAGGAIYLKALSLDGLQIVSDDAPKAVGAKVKLF*
Draft_103736	Draft_1037363	F003471	MSEYKQPQPVPVPNTAGYPNNVPNTQTKVKRGTGAAVRGKHYSKNSQ*
Draft_104702	Draft_1047021	F041590	MNTYLITLTRTKVADVPAPLPMHTRIDTRTRKPESRAFTIDIPTSALPDTSTVPAQFRPLVDSALLDACEQTLNTFVTSKATAGNMQIPVGLFDLEKLLTATAQRRMTAALLIGMWRNSSKYVLEVAPKLTSQTGSALLRYQANIEKHEKRLAALTGKNPELNMSAEDLDKLMVNLTEADSETPYGEYLAQRTEEVRSKLVEDSEAL*

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