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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300000514 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0073241 | Gp0054481 | Ga0011589 |
| Sample Name | Compost microbial communities from Sao Paulo Zoo, Brazil - ZC3D99 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | University of Sao Paulo |
| Published? | Y |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 18198123 |
| Sequencing Scaffolds | 4 |
| Novel Protein Genes | 4 |
| Associated Families | 3 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 1 |
| Not Available | 2 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Compost Microbial Communities From Sao Paulo Zoo, Brazil |
| Type | Engineered |
| Taxonomy | Engineered → Solid Waste → Zoo Waste → Composting → Unclassified → Compost → Compost Microbial Communities From Sao Paulo Zoo, Brazil |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Sao Paulo Zoo Park | |||||||
| Coordinates | Lat. (o) | -23.651079 | Long. (o) | -46.620668 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F059782 | Metagenome | 133 | Y |
| F078430 | Metagenome | 116 | N |
| F088555 | Metagenome | 109 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| ZC3D99_100177 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 7957 | Open in IMG/M |
| ZC3D99_105023 | Not Available | 1088 | Open in IMG/M |
| ZC3D99_109555 | Not Available | 609 | Open in IMG/M |
| ZC3D99_109655 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 584 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| ZC3D99_100177 | ZC3D99_10017716 | F088555 | MALRMYFDETVSSLVRDDISPTLGSPDTYEGPGAGGTVERKLYIYSDNFQRTYSQVQLTSLNADAQVQLHYALDDNGSPGTWQTTVDLPDGDYRTPYPIWVRVTFAPTDEPTLRTDLRHWLQWLEASRGDLIGYSRAHQHGC* |
| ZC3D99_105023 | ZC3D99_1050232 | F059782 | MRVEFNVARGRAVQGRGSQLAAFSVLLDIESEQLSVMERAELAQRLTVRFAQAIAEEFGGEEIEIRRSRE* |
| ZC3D99_109555 | ZC3D99_1095551 | F078430 | MATMLGGVVLPRVYVQESEPDWAGKPIRRWTLRTRPLTWEQYVAIEEMVREVGVARSIERAVDGTPHALGASQVGFVLDEGGGQTTETAVYIT |
| ZC3D99_109655 | ZC3D99_1096551 | F088555 | WMALRMYFDETVSSLVRDDISPTLGSPDTYEGPAEGGSVERKLYLYSDNFQRTYSNVQISALNTDADVQIHYALDQNGQPGTYQTNLQLPDGDYQTPVPVWVKVTFAPATEPTLRTDLRHWLQWLEAIAG* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |