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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300000727 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0075432 | Gp0054747 | Ga0001928 |
| Sample Name | Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 5 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 30239716 |
| Sequencing Scaffolds | 5 |
| Novel Protein Genes | 5 |
| Associated Families | 4 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Terriglobus → Terriglobus saanensis | 2 |
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | 1 |
| Not Available | 2 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Tropical Forest Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | forest biome → tropical forest → forest soil |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Luquillo Experimental Forest Soil, Puerto Rico | |||||||
| Coordinates | Lat. (o) | 18.0 | Long. (o) | -65.0 | Alt. (m) | N/A | Depth (m) | .1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002998 | Metagenome / Metatranscriptome | 514 | Y |
| F025902 | Metagenome | 199 | Y |
| F059555 | Metagenome | 133 | Y |
| F083637 | Metagenome / Metatranscriptome | 112 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| JGI12417J11878_1000081 | All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Terriglobus → Terriglobus saanensis | 12460 | Open in IMG/M |
| JGI12417J11878_1000082 | All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Terriglobus → Terriglobus saanensis | 12319 | Open in IMG/M |
| JGI12417J11878_1000221 | All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | 8205 | Open in IMG/M |
| JGI12417J11878_1009390 | Not Available | 606 | Open in IMG/M |
| JGI12417J11878_1010358 | Not Available | 575 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| JGI12417J11878_1000081 | JGI12417J11878_100008110 | F025902 | MWTYLFSFLLLRRLRIAKPIRYALAVFLIGLVIVVLIYTVILFLTLKERTSASHAAAVKVLTHTF* |
| JGI12417J11878_1000082 | JGI12417J11878_10000826 | F025902 | MWTFLFSFLFLRRMGLSRPIRIVLAVFLIGLFIVVLIYTVSLFLMLEERIGASHATTVKVIAHTCRIAAR* |
| JGI12417J11878_1000221 | JGI12417J11878_10002217 | F002998 | MSISVNRVWRQLPDEIRVAACKIFWAESKGAEKQFLFTALARAKNLRETFVRKTSTERLVNWTATTLSLPDPLVEDLLKQYLLHDHRAVIISFLELLKIPHSEGMIDENFDYTTLTKESVQEAARNLLASADRTGAELYLQYLVLQGDPWTGVEDVLSAGK* |
| JGI12417J11878_1009390 | JGI12417J11878_10093902 | F059555 | MKKKNYLALGAAALTIISVFLPWIELSSADNTSEYSGTFQAVDIYGISIGYGIFGLLVMLVGAIMAYKHYKWAFLSGIINFITGYGYLHQWFGRGTRDSANYGDVTSRSSVDPKFGLYLFIWVSLAFMFFTLKNYKSK |
| JGI12417J11878_1010358 | JGI12417J11878_10103582 | F083637 | MKKMLVVICSLVLALSLAGCGWGPWAGKGKAPIIGKGK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |