NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300000730

3300000730: Illumina Fosmids (spades contigs)



Overview

Basic Information
IMG/M Taxon OID3300000730 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0084151 | Gp0055190 | Ga0011703
Sample NameIllumina Fosmids (spades contigs)
Sequencing StatusPermanent Draft
Sequencing CenterIllumina
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size102581393
Sequencing Scaffolds23
Novel Protein Genes25
Associated Families17

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Nannocystaceae → Nannocystis1
All Organisms → cellular organisms → Bacteria → Proteobacteria1
All Organisms → cellular organisms → Eukaryota1
Not Available5
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales1
All Organisms → cellular organisms → Bacteria10
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameActivated Sludge Microbial Communities From San Jose - Santa Clara Water Pollution Control Plant, Ca
TypeEngineered
TaxonomyEngineered → Wastewater → Nutrient Removal → Dissolved Organics (Aerobic) → Activated Sludge → Activated Sludge → Activated Sludge Microbial Communities From San Jose - Santa Clara Water Pollution Control Plant, Ca

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationSan Jose/Santa Clara Water Pollution Control Plant
CoordinatesLat. (o)37.434249Long. (o)-121.946397Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002371Metagenome / Metatranscriptome566Y
F006142Metagenome / Metatranscriptome380Y
F006745Metagenome365Y
F007965Metagenome / Metatranscriptome341Y
F011091Metagenome / Metatranscriptome295Y
F011177Metagenome / Metatranscriptome294Y
F018530Metagenome / Metatranscriptome234Y
F021129Metagenome220Y
F024534Metagenome / Metatranscriptome205Y
F033108Metagenome / Metatranscriptome178Y
F037589Metagenome167Y
F045788Metagenome / Metatranscriptome152Y
F051875Metagenome / Metatranscriptome143N
F070896Metagenome122N
F078624Metagenome / Metatranscriptome116N
F078696Metagenome / Metatranscriptome116N
F095356Metagenome105Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
fpDRAFT_1000889All Organisms → Viruses18862Open in IMG/M
fpDRAFT_1001337All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Nannocystaceae → Nannocystis11969Open in IMG/M
fpDRAFT_1002058All Organisms → cellular organisms → Bacteria → Proteobacteria5064Open in IMG/M
fpDRAFT_1002263All Organisms → cellular organisms → Eukaryota6367Open in IMG/M
fpDRAFT_1002339Not Available15153Open in IMG/M
fpDRAFT_1004289All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales4768Open in IMG/M
fpDRAFT_1004657All Organisms → cellular organisms → Bacteria9395Open in IMG/M
fpDRAFT_1006593Not Available4097Open in IMG/M
fpDRAFT_1006756All Organisms → cellular organisms → Bacteria10355Open in IMG/M
fpDRAFT_1007124All Organisms → cellular organisms → Bacteria27909Open in IMG/M
fpDRAFT_1007302All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria30449Open in IMG/M
fpDRAFT_1007662All Organisms → cellular organisms → Bacteria38836Open in IMG/M
fpDRAFT_1007766All Organisms → cellular organisms → Bacteria33456Open in IMG/M
fpDRAFT_1007798All Organisms → cellular organisms → Bacteria39039Open in IMG/M
fpDRAFT_1008002Not Available36959Open in IMG/M
fpDRAFT_1008137All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria33625Open in IMG/M
fpDRAFT_1008210All Organisms → cellular organisms → Bacteria30809Open in IMG/M
fpDRAFT_1008258Not Available31738Open in IMG/M
fpDRAFT_1008305All Organisms → cellular organisms → Bacteria36252Open in IMG/M
fpDRAFT_1008701All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes38431Open in IMG/M
fpDRAFT_1008806All Organisms → cellular organisms → Bacteria26799Open in IMG/M
fpDRAFT_1008822All Organisms → cellular organisms → Bacteria25097Open in IMG/M
fpDRAFT_1009124Not Available36492Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
fpDRAFT_1000889fpDRAFT_100088924F024534MKPEFLTRIDALPDVFMLASLVQFKYVQDISEPNDSNFKVSMAGGHYTFGKPEQYDDFMNKYLSYLESKA*
fpDRAFT_1000889fpDRAFT_10008895F078696LWSSAVIYLSIQPRDAWQLTPFDFWALWDTHLDKMEITTGKSYSKPMTLAEFEEINAELDKIHGNN*
fpDRAFT_1001337fpDRAFT_10013379F070896MEINFASAGSMHLDALVMARGQYSLEVVAPGDAVAFVLVRGCLQITRQRAGEPASYCLHATPRAPLIILNPGTYTIVAERSAFGLRGTRRRR*
fpDRAFT_1002058fpDRAFT_10020584F051875MSMNLTDNKKNSKFSPIPPHLKAHARQLLTSYSISQVAAALNISRSFLYNIQKDKISLLDNKNQQTSGTESLNFIPFNYQQKKNHLINPATPLNFACEMIKPNGIRLIIHTSDPTSIINTFLCSN*
fpDRAFT_1002263fpDRAFT_10022633F095356MLTAPVAKGILKHNPEIVPCIVQCSTHFEIFLDGEPIAPQRMTTPPTARKFKTVTAAYSYLRTFLDYRRDVSIRIKD*
fpDRAFT_1002339fpDRAFT_100233918F007965MKTKKKKETRGGKRPLSGRKKADYETKTIAFRVRVEFVEPIKKMVKDYVSERLKGDA*
fpDRAFT_1004289fpDRAFT_10042893F002371MTKSKTKKETRGGTRKNAGAKPKYSEQTKTVAFRCPVSKVDELKSIVKSKLSEWSVK*
fpDRAFT_1004657fpDRAFT_100465717F002371MKLQRNKKEKRGGTRQGSGAKPKYKEETKTVAFRCPLSKVDELKLVVKSKLSEWLVK*
fpDRAFT_1006593fpDRAFT_10065931F006142YILIMKERNKLILEFTEFNLQRLNPDSVQASMHVDDPQLSLNAFDKNQDLIRQAMSRINDIMFTMKGTNAYGMLRSRLALEDQDIKALRILRMVKSPTLGYDVFIVMAIGDQEYWGKISDITTNAPEFSSEVFKDYDLYQPKEWIVKIKGLVIKTIKAWLKPEPGFYRLMNEEVICYSTETGKQLRMEKGIEIEVVRAHDNKIIIKHETDTYNLVNDNFVFFNWWFEKIEKALD*
fpDRAFT_1006756fpDRAFT_10067564F006745VRASDRRRTSSSAVAVYVIILMGFQVFLVTVAVEAFMTDTEELAWATAGVSVALFGLSVAFLRYLRP*
fpDRAFT_1007124fpDRAFT_10071243F070896MEINFASAGSMHLDALVMARGQYSLEVVGPGDAIAFVLVRGTLQITRQRAGEPASYCLHATPRAPLIILNPGTYTIVAERSAFGLRGTRRRR*
fpDRAFT_1007302fpDRAFT_100730223F021129MLRPAHIGHLALLRSLIRDAARDGAFDPALAWDSPAATRFFAELRQALKTGYFVVEDTTSRSVRTVAVPGYVYWADETAGSEPPVGFGLFRAIDDGYELWLTGLEAHLRGRGHGRAMLNALFSTPTGRRTKQMRVRRSARTAAVLEHLLAEHGFTATRESERETRFVRVAPLPPVEPPAAPRRPLH*
fpDRAFT_1007662fpDRAFT_100766238F078624MKLCIHVRPRDDGQGWAVDVFDGRRAWTKTHLGESPLNKAEAHRLAHKLRDPKFYTARTKRAVNSGGAL*
fpDRAFT_1007766fpDRAFT_10077667F011177MTEHEVLLPAEAARRLGVATRVVVEAMYEKRLPRVRLGDGTLGIPADALDSFHVRTA*
fpDRAFT_1007766fpDRAFT_10077668F033108MTERDPFDDPVPRRVTLSLDDAFRVLEAIEDARLELKDRGAAPGLQDELATVIRMLHGKLGFDEGGVQ*
fpDRAFT_1007798fpDRAFT_100779833F006745MRSSERTRRASSAVVIYVIILVAFQVFLITVAVEAFLTDEETLAWSTAAVSVVLAGSSAALLRYLRP*
fpDRAFT_1008002fpDRAFT_100800222F002371MASKTKNGKKEKRGGTRQGSGAKPKYNEQTKTVTFRCPMSKVDELKIIVKSKLSEWSGK*
fpDRAFT_1008137fpDRAFT_10081373F011091MFGFLTSGAKDIADPLVSAKATGAWLRQLPALDVIGRQQHVMGALDAMRQSRRPVDPARAQAVQFLDAALGADRRQLIKQYVENYDAASRLSERIWQAIYDLSQGFIFAYQTALEASLQAPQHPRWKGLPPALFARLLHYYGTDAKLRVFRFERWIPGKWIELHRTYMRASELGLDRVPAILGGAGGNATRWSAEQEYINVLLVHQLNTGNMTPPELDWAMSQLRAWSRRLELDAVPRSPEGFFVDVAGKSGLGRRTGNDSGSMLRYLDTTPLAEALERAIAALRQAEATDHGPATAINQSRIAILERVAPSVAPNINAELRRDPRIACAVAAKVRIGLSRICHELTQDGADADAAPGTEQIEVFAVASGRRRTPDEHDSLAASLSSFSDPMWQVKDRSVAGLRIAASGGIGQALTLGALVAVRQSDLSDWVVGVVRRLNKVNNDEVEAGMSIIADRLVAVALHSVRQPKDDRGFVVDGIDVSTMGARFHGLYLPPPSRPDKPLTVKTLIVPTQEYAEGRRVILTTGRSIYTVALRHLIEQRVDWSWAAIQIVDKKPRQ*
fpDRAFT_1008210fpDRAFT_100821021F037589MTTPRIIPASSLTPGLAMVIVSLPGRTIRSRVFMVQVQPHGYVQVAFTSGDMITLSPRTMVGSIERSARARGPRPPHASNAS*
fpDRAFT_1008258fpDRAFT_10082587F018530MSLQGIPGITQTTRDFVQLVRAYTRDIPELNRIVAGEESSDRQIAWAILDAVADFNGTPHRTAYSLEELLQFKQHHLLLRMATISLIESVGLLQTRNHINYSTGGTSVGVNDKTPMLMNWLGYFKSATEQKKQHVKVALNIEGILGPSNSGLFSEYWAVNGTYAAY*
fpDRAFT_1008305fpDRAFT_100830517F037589MITMHTHRIIPASALRPGLATIIVSLPDRTIRSCVFMVQVWPHGVVQVAFTSGDMLTLSTRTMVGKIEHAAGPRRRVFMRRVW*
fpDRAFT_1008701fpDRAFT_100870133F002371MKLQPKKKKETRGGTRQGSGAKPKYNEATKTVAFRCPLSKVDELKLIVKSKLSEWSVK*
fpDRAFT_1008806fpDRAFT_100880620F078624MKLCIHVRPRDDGQGWAIDVYDGRRAWSKTHLGESPLNKAEAHRVAHKLRDPKFYTARTKRAVNSLTVERGPKAVPHE*
fpDRAFT_1008822fpDRAFT_100882211F037589MTTPRIIPASSLAPGPATIIVSLPGRRTIRSRVFMVGLRPSGLVNVAFTSGDMIALSARTMVGSIEHAPQRRRPRPPHISNAS*
fpDRAFT_1009124fpDRAFT_100912452F045788MIKIITKMIQKVREILFERNISQNYPIEVLYKAGMDNVKENIEFYFDKTYTCESVIKELFIRGVIKFIDDRKSKIKK*
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