Sample 3300000900

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300000900

3300000900: Diamante Lake Red Biofilm

Overview

Basic Information
IMG/M Taxon OID	3300000900 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0085306 \| Gp0056048 \| Ga0011715
Sample Name	Diamante Lake Red Biofilm
Sequencing Status	Permanent Draft
Sequencing Center	INDEAR Instituto de Agrobiotecnologia Rosario
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	42651092
Sequencing Scaffolds	1
Novel Protein Genes	1
Associated Families	1

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Halorubraceae → Halorubrum → unclassified Halorubrum → Halorubrum sp. 48-1-W	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Red Biofilm Microbial Communities From Diamante Lake, Argentina
Type	Environmental
Taxonomy	Environmental → Aquatic → Non-Marine Saline And Alkaline → Alkaline → Microbial Mats → Red Biofilm → Red Biofilm Microbial Communities From Diamante Lake, Argentina

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	freshwater lake biome → freshwater lake → microbial mat material
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Surface (non-saline)

Location Information
Location	Argentina: Catamarca Province
Coordinates	Lat. (^o)	-26.034111	Long. (^o)	-67.039458	Alt. (m)	N/A	Depth (m)	.5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F062489	Metagenome	130	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
diamDraft_1025462	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Halorubraceae → Halorubrum → unclassified Halorubrum → Halorubrum sp. 48-1-W	576	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
diamDraft_1025462	diamDraft_10254622	F062489	VTGPDAIILRERVAEGPTRRIVWHPLTTGGYERREQLWRQSIEGWHTTGTEIVTDLTIDRPEGRR*

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