NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300000974

3300000974: Marine microbial communities from the Deep Atlantic Ocean - MP1092



Overview

Basic Information
IMG/M Taxon OID3300000974 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0053074 | Gp0054791 | Ga0000792
Sample NameMarine microbial communities from the Deep Atlantic Ocean - MP1092
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size25480041
Sequencing Scaffolds6
Novel Protein Genes6
Associated Families6

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosarchaeum1
Not Available3
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameDeep Ocean Microbial Communities From The Global Malaspina Expedition
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationSouth Indian Ocean
CoordinatesLat. (o)-29.81Long. (o)82.62Alt. (m)N/ADepth (m)4000.29
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012125Metagenome283Y
F041257Metagenome / Metatranscriptome160N
F069480Metagenome124N
F071320Metagenome / Metatranscriptome122N
F082562Metagenome113N
F085813Metagenome111N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
JGI12031J13088_100156All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosarchaeum4183Open in IMG/M
JGI12031J13088_101224Not Available1763Open in IMG/M
JGI12031J13088_103290Not Available1027Open in IMG/M
JGI12031J13088_104174All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium881Open in IMG/M
JGI12031J13088_106326Not Available677Open in IMG/M
JGI12031J13088_109076All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium548Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
JGI12031J13088_100156JGI12031J13088_1001561F069480MPNHIEFIDRIYILELCKDVKRVEGNAGQILDEAPKNKPYNTMKTDFFSVFKLEFFSENIQVF
JGI12031J13088_101224JGI12031J13088_1012243F012125MSDTRYSVMHPDGGKDSFFSAGKPKNLPRFYFLVLAGIFLIIFMFXWFD*
JGI12031J13088_103290JGI12031J13088_1032902F071320VISWEATVSQGWEKIARDDKLYSMASRVPVFDADIPLRESVFFLSNPSSCSRNNPDR
JGI12031J13088_104174JGI12031J13088_1041742F085813MDQFEIIWILATVIGALNYGLNAYQKGFRRLLKWDVIFLIVLNTLMFVPLSLIVGL*
JGI12031J13088_106326JGI12031J13088_1063262F041257MQEFKPNYRPLGSEEDDVVDPRSEQADGPFDHERFKTLTVLAHAAGRVMDRYAIKGFDGFTNRQADWACKLQSFFNLSNTFETLVLLLFTFQFSQNERFDLEMGKTEPIDRSHPLSQALMAWVWWDPSSETSRVDRFYPWEYGEERTIRMVAIASGLLPEPIDVTSPSDV
JGI12031J13088_109076JGI12031J13088_1090761F082562QTNDSLRNYFLDIELSIIHPILGGFGGTIGIERNHSSFGVMGFGTKLNHMMKHYFIEDAEELAVYNWGVELYSDYYIKQNHRGLFIGSLVSINGFRFTDIPNPQTILVLYAVPRVGYRICLPKKLNAFYFQPSLTAHIKFWDNQEQFLYREIDTKSIFLLSQLTLGMKI*
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