Sample 3300001260

3300001260: Freshwater microbial communities from Lake Mendota, WI - 26JUN2008 deep hole epilimnion

Overview

Basic Information
IMG/M Taxon OID	3300001260 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0063444 \| Gp0054332 \| Ga0000701
Sample Name	Freshwater microbial communities from Lake Mendota, WI - 26JUN2008 deep hole epilimnion
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	Y
Use Policy	Open

Dataset Contents
Total Genome Size	23657789
Sequencing Scaffolds	49
Novel Protein Genes	55
Associated Families	46

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	3
Not Available	37
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Rosales → Rosaceae → Rosoideae → Potentilleae → Fragariinae → Fragaria → Fragaria vesca	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Paraneoptera → Hemiptera → Sternorrhyncha → Aphidomorpha → Aphidoidea → Aphididae → Aphidinae → Macrosiphini → Acyrthosiphon → Acyrthosiphon pisum	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Xanthobacter → Xanthobacter autotrophicus	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amphibia → Batrachia → Anura → Pipoidea → Pipidae → Xenopodinae → Xenopus → Silurana → Xenopus tropicalis	1
All Organisms → cellular organisms → Eukaryota	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa
Type	Environmental
Taxonomy	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	freshwater lake biome → epilimnion → lake water
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Location Information
Location	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.099444	Long. (^o)	-89.404444	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000815	Metagenome / Metatranscriptome	879	Y
F001989	Metagenome / Metatranscriptome	607	Y
F002931	Metagenome / Metatranscriptome	519	N
F003024	Metagenome / Metatranscriptome	512	Y
F003728	Metagenome / Metatranscriptome	471	Y
F004133	Metagenome / Metatranscriptome	451	Y
F004315	Metagenome / Metatranscriptome	444	Y
F004424	Metagenome / Metatranscriptome	438	N
F004578	Metagenome / Metatranscriptome	432	Y
F005173	Metagenome / Metatranscriptome	409	Y
F005695	Metagenome / Metatranscriptome	392	Y
F011065	Metagenome / Metatranscriptome	295	N
F011366	Metagenome / Metatranscriptome	291	N
F011370	Metagenome / Metatranscriptome	291	Y
F012550	Metagenome	279	Y
F012556	Metagenome / Metatranscriptome	279	Y
F013867	Metagenome / Metatranscriptome	267	N
F015963	Metagenome / Metatranscriptome	250	Y
F018326	Metagenome / Metatranscriptome	235	N
F023783	Metagenome	208	Y
F026811	Metagenome / Metatranscriptome	196	N
F027112	Metagenome / Metatranscriptome	195	N
F029991	Metagenome / Metatranscriptome	186	N
F031358	Metagenome / Metatranscriptome	182	Y
F035561	Metagenome / Metatranscriptome	172	N
F037071	Metagenome / Metatranscriptome	168	N
F039473	Metagenome / Metatranscriptome	163	N
F045566	Metagenome / Metatranscriptome	152	N
F053089	Metagenome / Metatranscriptome	141	N
F053090	Metagenome / Metatranscriptome	141	N
F057094	Metagenome / Metatranscriptome	136	Y
F057130	Metagenome / Metatranscriptome	136	N
F057883	Metagenome / Metatranscriptome	135	N
F058686	Metagenome / Metatranscriptome	134	N
F064383	Metagenome / Metatranscriptome	128	N
F065450	Metagenome / Metatranscriptome	127	Y
F065451	Metagenome / Metatranscriptome	127	N
F071949	Metagenome / Metatranscriptome	121	N
F079377	Metagenome / Metatranscriptome	116	N
F079597	Metagenome / Metatranscriptome	115	N
F083751	Metagenome / Metatranscriptome	112	N
F098293	Metagenome / Metatranscriptome	104	N
F098643	Metagenome / Metatranscriptome	103	N
F102145	Metagenome / Metatranscriptome	102	N
F102514	Metagenome / Metatranscriptome	101	N
F104446	Metagenome / Metatranscriptome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
B570J13880_100123	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	10854	Open in IMG/M
B570J13880_100678	Not Available	5019	Open in IMG/M
B570J13880_101045	All Organisms → Viruses → Predicted Viral	3820	Open in IMG/M
B570J13880_102597	Not Available	1881	Open in IMG/M
B570J13880_102739	Not Available	1784	Open in IMG/M
B570J13880_103339	Not Available	1472	Open in IMG/M
B570J13880_103356	Not Available	1462	Open in IMG/M
B570J13880_103378	Not Available	1450	Open in IMG/M
B570J13880_103719	Not Available	1334	Open in IMG/M
B570J13880_103985	Not Available	1244	Open in IMG/M
B570J13880_104201	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Rosales → Rosaceae → Rosoideae → Potentilleae → Fragariinae → Fragaria → Fragaria vesca	1186	Open in IMG/M
B570J13880_104585	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Paraneoptera → Hemiptera → Sternorrhyncha → Aphidomorpha → Aphidoidea → Aphididae → Aphidinae → Macrosiphini → Acyrthosiphon → Acyrthosiphon pisum	1091	Open in IMG/M
B570J13880_104660	Not Available	1077	Open in IMG/M
B570J13880_104689	Not Available	1072	Open in IMG/M
B570J13880_104768	Not Available	1057	Open in IMG/M
B570J13880_104996	Not Available	1011	Open in IMG/M
B570J13880_104997	Not Available	1011	Open in IMG/M
B570J13880_105018	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Xanthobacter → Xanthobacter autotrophicus	1008	Open in IMG/M
B570J13880_105128	Not Available	988	Open in IMG/M
B570J13880_105381	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	943	Open in IMG/M
B570J13880_105767	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amphibia → Batrachia → Anura → Pipoidea → Pipidae → Xenopodinae → Xenopus → Silurana → Xenopus tropicalis	888	Open in IMG/M
B570J13880_105897	Not Available	871	Open in IMG/M
B570J13880_106302	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	823	Open in IMG/M
B570J13880_106331	All Organisms → cellular organisms → Eukaryota	819	Open in IMG/M
B570J13880_106380	Not Available	814	Open in IMG/M
B570J13880_106411	Not Available	811	Open in IMG/M
B570J13880_106988	Not Available	753	Open in IMG/M
B570J13880_107020	Not Available	751	Open in IMG/M
B570J13880_107144	Not Available	739	Open in IMG/M
B570J13880_107526	Not Available	708	Open in IMG/M
B570J13880_107701	Not Available	695	Open in IMG/M
B570J13880_107866	Not Available	684	Open in IMG/M
B570J13880_108071	Not Available	670	Open in IMG/M
B570J13880_108106	All Organisms → cellular organisms → Eukaryota	668	Open in IMG/M
B570J13880_108297	Not Available	655	Open in IMG/M
B570J13880_108302	Not Available	655	Open in IMG/M
B570J13880_108497	Not Available	643	Open in IMG/M
B570J13880_108514	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	642	Open in IMG/M
B570J13880_108640	Not Available	633	Open in IMG/M
B570J13880_108740	Not Available	627	Open in IMG/M
B570J13880_109071	Not Available	609	Open in IMG/M
B570J13880_109296	Not Available	597	Open in IMG/M
B570J13880_109316	Not Available	596	Open in IMG/M
B570J13880_109764	Not Available	574	Open in IMG/M
B570J13880_109881	Not Available	569	Open in IMG/M
B570J13880_110032	Not Available	560	Open in IMG/M
B570J13880_110305	Not Available	546	Open in IMG/M
B570J13880_110852	Not Available	525	Open in IMG/M
B570J13880_111395	All Organisms → cellular organisms → Eukaryota	506	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
B570J13880_100123	B570J13880_10012314	F102145	MVSYKIHVLKILAEKMATEKQEATETLLYNFEYPMITECGAVKITDHHVILQFPEKPTVHVEHAVKLRRNITLYVENGQCFSLDWLPIQTVTDFFRVKEMIEKCLQSYSYLLDNKTHFSPHTFSVNPINYYESLTTGFTTNSFSLSCFEHTFDTCIQLSVINKECDKKEIPLHFQLCIGKHVVFCTERDLKCVDKAKDVHFIVQFILQKMLNISLL*
B570J13880_100678	B570J13880_1006788	F053090	VGLKLKYQFDEELIETYISSKHKNNEDDEQPTKKLKLYNKKKISILEYSCVQLPLVPFIDYLEKYSKTFVDQCLTYNNFNETSD*
B570J13880_100785	B570J13880_1007853	F098293	LAKYQFKRGSPLQEYLQTKMREKYRIPTITFTLQNLISDLGXIINKEQLFDPLNPXIILCDSDLEVALXLKALRVTDLKHYILSQLVCIVPYQTSFKNPYYAIETRSDRNRRYFNKLEIQFKQMDQQMSQRVFKKAESYKLKPLLKRALKRMPSFPHHQRTFKFNEICMYLEKYFESYEDDLFDPRNVNLCMVHNDPLGKAFNVNAFHICQTTHLLQHNIIAV*
B570J13880_101045	B570J13880_1010452	F018326	MVSAVPGQTGRQESSLRCRQMVAAENEGQCFRLNVLYDWGASVSMISEEAVEVMGLVSTKQAKRIIKGLGGATTVSKGTCTLGLVARNGDRKTVTAWEVGEIASLPGGEPPEDVDEQFPGLRYLSEPNCLIQKAGPVHLLIGMDHAHLMPEHVAESADLSSQLRLMSSMFGGQHILVGEGAPRLSWVDAMDADERYEAAANRRRKREDCRKMAQEARQTALKHTHKLPRRLWNEDKEKSHSTVRGRPQSGGECGSSCKERRSLWKEELTSLSTLVGTVATLLAVITPSEGVEIGGSPGERSLLKTEPGMENILIMDY
B570J13880_101296	B570J13880_1012963	F057094	VVFPVLVADVDVREDSIFIRLRKEEVVCEDQDTSKRVSSIDVLEPVVEKVPEIGSEVTVPLETIPEDLIFESGEAF
B570J13880_102597	B570J13880_1025975	F079377	VYVQTAGPTDFQNVSRISFLPANFTIDEDNFSSITENSLVVLDDFSFKLANNKQAKINFLKVVNYILR
B570J13880_102739	B570J13880_1027391	F053089	IIENHLLSHVIPAPVDISNDLQNKHMIEDFFVYSPVDIIYKDPSSVFWIHPFVDFAMNRSTGNVGSWNKLLFMFTEFCLNNTTYFTRFSDSIIGINVNTSLTSLFDFKFFHLSQVETLLQQITKFLGRKNSMIQSCHFITHNPTFDYITSIHPNVFTFIDYIINNHNDMMPDFKTGIFNI
B570J13880_103339	B570J13880_1033391	F004578	MGAGQNETGARASFGFGGKVSETGTRKERPLEGGSRSRGVKEMVDVFRCLLAPHCGDRHRAMACEKFKGLSLPHRQSIIAEQELCANCLRHSENDIRRRKECLRRAAEPHWVSSSVRRPGRTPSPVEEMPTLGASAAGKVIFACRMEVMVKTKADLRQGEYGADLSVLFCPTRQMTAVVESVAIEKGIPWRAVPEVTVMLGDGRRET
B570J13880_103356	B570J13880_1033561	F064383	NPPRESFHGMFPKECLPMLHYMRPQFRFLIYLGQNNSRFNMADELDRFFYDMEKVASGDASVWGAPVVIDGVHILPEVECVVPSWLRQEFFARTSDLASPAGQHYVYPGVRSPLLLPTDYIRKYFSIYVYI*
B570J13880_103378	B570J13880_1033782	F005173	MRLDESADGHFSYGPSLGLFREPFINERYLFGDSQYHNCKPYLDMEKKFFSDNAAIVREVYFDTDILLGVDSDEDLGVEEAVNAEDLVPVLSAEEIQWQHAAANDILNMEIVRVTPVNSDSEDEETMERVASPVVVEAVSDVTDTNEATGSADNVVNNSPNLVIAEEGDYVEEAVEGRADVPSGPGPFSEDVTMDDFLPRPTRGSVVFLAFSDW*
B570J13880_103453	B570J13880_1034531	F058686	SKMADVFVHIFDIIELTAYRLSDTILTIATEESDTFMLTFNITNMDQEIIKLIPQILPNIAHANTEPTTFDLFFTKYVNTTQDLAFSRLKLTQTEIIRLESRKKSILYASLMQFKISVNKRLSALANAILNTTSEHEEFPDTLLFTADQSPYSFKSLVLNVLQISSEEILTEFFLIIQNQKNTLYQNVAGMLNIHHVPNHLSRAAYSALDRARKDSLETLIPVESIKRPLSKPKTSLKIKMLAYNATNNIPAVVQKVAPTKKRSRRSWGGFWGAALSLATEDQLNQALQKEVEITDNERILSSSLFNITITNAQMISSLKTLTTGVSKLVTEEQGIFDQIDTIMDSESQYLEQLNELINLVDKTTTLVADYQMIQLQISLLIHLTEKVKALVNAILTHTIDVTQIPLSIFKPHLQDNLKMTLRLANYKLKQTTGGTVLNIQMPVLSNPYIMYTFQILPFKINNLWYQSVTPPD
B570J13880_103719	B570J13880_1037192	F011370	MAEARGSGSQQGERELAAPPGSEWCGDKERSQGGEMGTLSGGDSASRRNYGEGNMSGLPDKPLRKGAMVCPYAPYCGIAHEAIRCVRPNTLSKEHRRAIDRSRQVCLQCREGGMEADEICGQCRDDPARASVPNPPAAQWPKPSWI
B570J13880_103985	B570J13880_1039852	F098643	TEGGSRGRSYAWYDVPLQDEDGRVRQIRAYGVLRTARVKNEGENGKVLGDSPGGATGPAQLWECIDLIVGRDNQDRRPENTLGWPGRRPKGGYAVKGTGDPGDYIKVKIGSPNPRN*
B570J13880_104201	B570J13880_1042011	F057130	MANPLLKLADFKAEYKLNKALQRITNCMAGTLQANGQPMFPNEPGTLLNDIIRDYNLQPAEAPPPYDFGLDNHVTIEAIKAECTRRNVSFFDVTNSHGNRQFYDITYGAEPQPGQEPDLNPWREYSRPETADKNLELAQVVCHGDSTTIVDWTTTMEELRKLFLARVYTNDMAKCCLMHLVQKYHPEQRILLRTMTANQIATYLLQLDSNRDKRTLHRQQLFRIMRSPEEDLAAALARVQLSIDAIYPANDPAYAVHRSNTLRAAILSFCSDPVAQAVMELIRSRQSECLPLTDEEVKEYAIKFEEYTHCKPVENLAFGRKVNNMPVATFIQLNSSEVTANTIYPAYPAYPSGFDNPYPAYQTFEQVRHPNVGHRLQQQ
B570J13880_104585	B570J13880_1045851	F039473	AIQGMTNAMNAIANQVIRSSGRSGRNAGWPYFDGTFRDYPGFKRKFESFRTTYHRGTPTRELFQQFREMCLPEKLSIRIKSANTMENAWTRLDAWFGDKNLFIKDLMQDIRSVSPIKDGDDERLMDYYVTLQAHIEEAHSAGALGMLLIPANVELMVLPLTTWEKRLWREAQGKLAAEDRSWYMSRFVNERLTYAINMVATSERHVLPKAIPHYRSQRSPSSEGRGGRYSRPGSFGRSAKTMVVKESGSADQKKVRFPPPKNWNPDAKWTQDCVMFKDCGEKHAPWMCDAFKKLSPQQRLKKIEERELCHLCYRHLQGRDCWSKDKVPNCGEDGCKAAHHHLLHGALVQGRVMIVQDISTKKA
B570J13880_104660	B570J13880_1046602	F027112	MQGKPEFKNSAELRHPTVETEPTQVSQVSGHQIPAMGHDSPAFQAEINDKIHDKNKXDFESEDTVELNSYKFPKPRFYNPNRYQSERPMDTFELLSDIARQVGPKERPLTYQDFLEETLRKSIKPKKAKAAVLNSIETDPVYLKGINLSIDEQKMVALMDTGSTHNLLAYDVFVTLKDKTFTPVNMDMKVAGSTLSNNIVGKAQLNTVFETTTGTVVLPLTYLVAHKLNGYHSIIGAQMLTNPRIIKATTPFHVHLNEDHKNAV
B570J13880_104689	B570J13880_1046891	F079377	MPQSFFQTAGPTDFQNVSGISFLPANFTIGEDNFSSITENSLVVLDDFSFKLANNKQEKINFLKVVNYILFIHKLV
B570J13880_104768	B570J13880_1047681	F003728	PKAIPYHRSQRSPSSEGRGGRYSRPGSFGRNVKTMVVKESGSADQKKVRFPPPKNWNPDAKWTQNCVMFKECGEKHAPWACDAFKKLSPQQXLKKIEEXXLCHLCYRHLQGRDCWSKDKVPNCGEDGCKAAHHHLLHGALVQGRVMIVQDISTKKAGVFLCREDVRVEGAGGTSSLHALYDWGATVTLVTHAAAAKAGLEKRVQVAAAVAGLGGCCTAVDSYYMVPVVDGDDAVRVVKALGVDHIATLAAVDVTEDIVTRIPRTEGFVEKLARPARDVEMLIGMDNQGWMPVHVDSSQLASXNLRXMQSVLSPRCILMGSVKKPERGRVTQGSVDDAPAAAKKKPGGWLRGG
B570J13880_104996	B570J13880_1049962	F035561	MDLVTPNFRLADSVLQTLSESQLETYICHHGPREFETQKLRDIVAANMQPDIYPKRKDVYFALAIYLYRAGHTRTVLNALQFEGFAPGPSPDRRMDESTDFGQPRWWTSYEWALRRPASDFQG*
B570J13880_104997	B570J13880_1049971	F083751	MVVQIAFLILHKISPLENTLTEMPLRKFVYLFKDLSSTYTVISRIGKFFVS*
B570J13880_105018	B570J13880_1050181	F004424	DLRALVLPMVEAQEARKTETPPEVVPLDAQQGVTLPVGEHQETRSFKRKRTGLSAFHYDKEAFEILKDKKRMEIHEFRMNYQGPPYNPVERFLWGEICRDYDCPMGNEAFSHEIGKECETXPMEAWXSEPADIILTSDAAKAYREAEAALAEAKEKNPNWSMDKDWICDDKSCPNLYRHARGEACMLKMEDMLPLTTMPKDPASAKLIKGALNHGWKYSGMKPYTGMYCVNNLTVEKCNNYAKLIKGALNHGWKYSGMKPYTGMYCVNNLTVEKCNN*
B570J13880_105128	B570J13880_1051281	F012556	NGMGADEICGQCRDDPARASVPNPPAAQWPKPSWIMVPEADTDRVFYECTTLSEVARYNPGPRQAIYKEINVLFDYDQEHTILYTEWLRDFQVELLPTEPKTIITALGRTTESRQIAILPFKPKKEGEERVMVGAWVVELATWSKGTAPKIKNLRERFAWRPSIPMSRTARQPQAMDLVIGRDNQKVFPEFVQEAKYKKDDLVLCDIPFSPGQVVHGHALKCIDWVKKLEVSEDALKPQFKIPIKGKRRTKNVARPVVARLLSRESTGSSACQSPLQNLLDEVSDLGEAEGGSVPRGRPRGTTSWRQDSQRAGCKERAAWKVNLTSPG
B570J13880_105381	B570J13880_1053811	F057883	RARDALKTLTPVATIADAAKLLDAQDACEHAIGWIAMVEERCKGEQLHLDVKHEPREVDFVPFRPGNGISIYEFFQRFEDWSRGQMSQDQRANVLYNRHLDFSVTDGNKELEDAKGNYPLMKSILLEKWGIADIVCDQYLEGIKRIKMPSDPKDKVGMLTYVKNAYSRLVTLTKLEVDRGQPVPGLEDYFLSNQFLKRVHRLLPEELGSRFLMKIQENGESYYLMKGKPYMDRIIALLRCYYKSLEIALEDRPDLPIITKSGTVSSAGINLMSTSGYASGQESHSPVEPPREPAQLTVMAAVANTTAPVPSASQ
B570J13880_105767	B570J13880_1057671	F023783	CVTLVLHLGYTRVTLGLRYTCVTLVLRLCYTCVTLVLRLCYACVTLVLRLCYACVTLALRLCYTWVTLGLRLGYARVTLALRLLYTCEFNINIRLSRQLSVCHQSDVSLMSVCHHSVVCLQ*
B570J13880_105897	B570J13880_1058971	F037071	REVESVSQLDIREGTAAVMALSPEDVRYLRHWEVSIRCLLRDPDLDFVRCLRIISERIVPQLVPAVNLEEHRRQTKFSACDEFACEIWAGYLGSMITRNDKELADIFKRVSEEVMLEQGYPNTMKLGLWVHPYKLIANVCRALATSDMGRSFLKKFVFTREYRGLEESERATNAPPGSNQRPREARLADVIASMAKSHSGRAHLRDCVLKGKEELFGWRVGEHEMSVTLSEHGGVPKYDGTDDIFIRIHLDSVPESIITGRHPTDHQVPDRPLRRGPTARETGPGWVST
B570J13880_106302	B570J13880_1063021	F013867	DEPIAEFDFELGDPVTIEAAGRLCRDRRVNGAPAPVNLPAMLVTAGQRLFFNTALQQPETYVEIARPEASDLPSEIAVCHFLDGAKTVIDWALSLPKFKALAQERVYTARMAQQALHRLVSRFTPEHSHLVSDMTANEMANYLLRTETNRDKTAYRRKELHELVRKPDMELRAPLTTARRLIDVIYPADRAGTETQRSTVWRTAIISFLPDEIAIPLSDRLKVANEICQPITDDELEAMAYQAEEVYRKPPPFPLKFGRNIGSIPVSALIQFNS
B570J13880_106331	B570J13880_1063311	F012550	MCYACVRLELLLRYACITLALRLCYACVTLVLRLCYACVTLVLRLRYACVTLVLRLRYAWVTLGLHSGYAWVTLALRLRYACVTLALRLPI*
B570J13880_106331	B570J13880_1063312	F023783	MHYACVTHVLGLSYTCVTLALRLRYACVTLALRLCYACVTLVLRLCYACVTLGLHLGYTRVTLGLRLRYACVTLALRLLYACEFNINIKLSRQLPVCHQSDVSLMSVCHHSVVCLQ*
B570J13880_106380	B570J13880_1063801	F026811	GYVFTVISQEAAARYAMHRSRLPEPLMIAGPAGQQVRAVGRCEIAFPQEKAVGGKMIIFAFEVEELEELHETPYGGLERWHLQLGEEDEGYLRWLRVAQTGDRPYCELTLERVTLDPARVSRSTWKFLVCKGWQMTETVWLTAVRAWNMPVSRLSADAATRLGLTEKPNDWCQVRPCNAAGRQLDGFLARIASVLEIAPPGYPTEKRPREMNFRTPDVVIGTKDWESVEGFLRNVEPDKMAELKEKRRYHMRVVLRNEERWYLNVLVSETT
B570J13880_106411	B570J13880_1064111	F012556	MGADEICGQCRDDPARASVPNPPAAQWPKPSWITVPEADTDRDFYECMTLSEVARYNPGPRQAIYKEINVLFDYDQEHTILYTEWLRDIQVELLPTEPKTIITALGRTTESRQIAILPFKPKKEDEERVMVGAWVVELATWSKGTAPMIKNLRERFAWRPSIPMKRTARQPKAMDLVIGRDNQKVFPEFVQEAKYKKDDLVLCDIPFSPGQVVHGNALKCIDWVKKLENSDDALKPQFKIPIKGKRRTKNVA
B570J13880_106988	B570J13880_1069881	F000815	MDPFTQQIQRVENNDKVREIVTAFRLIPINDNAARDQLEETLTRILTPAAHKIPETQQKITDFSFTEPDLSYHDIAEKPKYRQMKHGIHYLDEDNTLYYNSAIEASEWEDENVVATAARDEATAAAEDDATIQRAYNAALARQQAINTKIFAQPPRWVLIKRRALNDTRMEDSLLQYIDKKHTQVDWYSTITTLHKTGTKIGY
B570J13880_107020	B570J13880_1070201	F003024	MVRAGDNPMQKLAMMMAVMILGMSPAHAYSINVDPGSLEVGGLVEMMPPLARVYNDDWTLTARNTVSSVVTEGYRPVEPGGYFVEWTLQQAQLEIEDLERTRNRILRSGQVEAEEAPGEPRERNQVYRLEGEATPKTTEALRRGADAARGRGRSHQ
B570J13880_107128	B570J13880_1071281	F071949	MELIQSAMRRSHSRDSARSRKSEEGTTARHGHHSQDPIYQNEGNNDCDDNYSVLGSEDSILPENYEQTKNDPIGKILLDIAHDQTMLAKKCKLENMSVNIHEICENFEKFMDIGEKQRQKHSEQTQDEMEQRLIRKKLSSHLINQAFRPPAFAKTPALTSIGRTSDILKLFPHRNNKFSG
B570J13880_107144	B570J13880_1071441	F045566	ILSSSLFNMTITNAQMISSLKTLTTGVSKLVTEEQGIFDQIDTIMDSESQYLEQLNELINLVDKTTTLVADYQMIQLQISLLIHLTEKVKALVNAILTHTIDVTQIPLSIFKPHLQDNLKMTLRLANYKLKQTTGGTVLNIQMPVLSNPYIMYTFQILPFKINNLWYQSVTPPDVAINAISEIIDVQSTLKGCTKIHNDYACDPQHVRVYKFEGLLKAIRDQDDYEHNSKLLCALQTYREIASTVP
B570J13880_107526	B570J13880_1075262	F065451	EVIENLLAGIVLVAYQKRGDFVLKLEFDRFEPRNELQRFWAPYINSEDPPRPAVQITQELLWLQARHVKNTEEFGTPYVCDHGYDKILHRVLKDCLKLLSSLTDLSIRTIAFRQMEKDV*
B570J13880_107701	B570J13880_1077011	F005173	FISCFSNSGWAVGPSGGIVEPDLVTRMRLDESADGHLSYGPSLSLFREPFANERYLFGDSQYHNCRPYLDMEKEFFSNNAAIVREVYFDTDILLGADSDEDVGVEEAVNAEDLVPVLSAEEIEWQHAAANDIMNMVIVRVTPVNSDSEDEETMERVASPVVVEAVGDLADVNADSEDEETMERVASPVVVEAVSDVADTNEATGSADNVVNNSPNLVIAEDGDYVEEAVEG
B570J13880_107866	B570J13880_1078661	F029991	DLYKMHEKTLFPGDETSHAFANNKYRRHMLSFPMYPFRTLCPRDAYNMNILKGGNSEFDQTSPLLPANTQLNIKFTRRPAAHLLSYMLPTNLNLNLGASHNALTQTERNNALNFTVTTPVETQYTITGIAINIQNMYLQVSKIFYIKIKIFEIKNI*
B570J13880_108071	B570J13880_1080711	F065450	APAARETVQPAGASEGEAARRRSGGGRPQQQQKAAGKQRTTAGRCEREQIARTANAAHQEESAKSYDEMRRACAELCLGTEKFLEPLNRALKGDSVKAIKSHRXALLSEVERIEGAAAREAQARGQDLNEVKELMRRMLTRTQDTLRAADITLCKWKAAHHAACIEDLADEAFEAQDGTREWSAQECTDFRKELDWELQAFRKANTKLELRLMETDERRAERV
B570J13880_108093	B570J13880_1080932	F104446	NVDSKTLSIPFGFVRSTPLSFIAISYSSCVTYFMFXKSHQSSHPVKXIIYSSYHPRIVHKIMYKYAQVIYPMLRVVARSMIIYLCPLDKKGGRICIDTTLVNGFAYIYLHVNTMRLWVV*
B570J13880_108106	B570J13880_1081061	F012550	MYYACVRLELLLRYATLALRLRYACVTLVLRLRYACVTLVLRLCYACVTLGLHLGYTWVTLGLRLGYTCFTLANLTSI*
B570J13880_108297	B570J13880_1082971	F004315	MKVASDVLLLLCLHDFGLRVTVGDGQASACLYSEARLYKGPGQSTLPQLAATRSTGNISVRIQKANHSNTRGLVSSLFFSRSEITAALSLHFQHLMKTKG*
B570J13880_108302	B570J13880_1083021	F004133	MLEMKYTKEICDHMVQAYNSGVTVPQLAQELDVPERSIIAKLSSLGVYQKKSYLNKRGETPVKKSEHIERIAILLNTNLELLESLEKVNKTVLVMIERALTDPKLP*
B570J13880_108497	B570J13880_1084971	F031358	LGTNRDRGLRPDRTGTRGLRPDRTDTRGNPVGIPILDRXDTQGNPXGMLVLDRTDTKGSPVGTPTTDRIDIRDSPVGMQTTDRIDTLGSLAGISLDLDTTKGLPVGDSQHLASGLHLETEVDRGLIIDRSQNLLVDQGHPDIIPIQDKVGHPTERTGRTGAVPCPPGTPTLS*
B570J13880_108514	B570J13880_1085141	F102514	WSFSDPVEGGVKVRMLPEVKPQPGRLVYRCRTTIYVKSRADLGSNNYSVQLTTLYDSNQRQSYIANEVAAAHALRYVQVPTQVVYTSSTTSEKTNRLYLLDVKPRTKKAAAKGPLLLTAYGLDKVDLVLPEESKLEMLRKRFADRPGRLSNTSLAQPEAPAQLIVGRDNPLYIPEVVMKSVRGGSDLYFMRSNFCSGELVFGETEESIMEQKK
B570J13880_108640	B570J13880_1086401	F011065	AKGVAKCLKPGWRSKEEVGGLGGCPMKGQWHGKLRGRQVLRDPGWTCVLFVKTGGANQDIFIRVMCDTIREQSVVLHSVAVKLGLRASGGPMWLTHPGEDPRYSSCVYEVPILDWKGRRDWIKARGVSHTTPSKQRDMPEGAMEAFPEISLSGVTVSQAAGPVDMIIGRDNPEWMPVPVQEEPYERFTLMWTSLSPRCILRDNEVVEWRL*
B570J13880_108740	B570J13880_1087401	F011366	MTAVVESVAIEKGIPWRAVPEVTVMLGDGRRETSTKLFLIEVKATRSYRASKEPEPILIAAYGVQNLAPFAAAAPELPLLRHRFPSARPASMGLLAQEAGPVDLVIARDYRKQWPTVASPSCFQADDLYLMRSNFYPGQLLYGLADPDAVGIKMKGAKRKFALGKRESAGSSTSSSRRPRAATPAAESPERRRHESPSPVRRVREKSR
B570J13880_109071	B570J13880_1090711	F001989	VAESADLSSQLRLMSSMFGGQHILVGEGAPRLSWVDAMDADERYEAAANRRRKREDCRKMAQEARQTALKHTHKLPRRLWNEDKEKSHSTVRGRPPNGGECGSNCKERRSLWKEELTSLSTLVGTVATLLAVITPSEGVEIGGSPGERSLLKTEPGMENILIMDYWMVLPIIVMVVTSLIMRVQKHLGETWRPGEDGPILDK
B570J13880_109296	B570J13880_1092961	F002931	ADGGYDEEPSPYEHPDEDRPRLCQQLIQLEIDGELTALHTLYDWETPNTLVRTEGARRIGLQGVRIPKQAIKGYQGVGTITDSVYHVPLVDADGNVQVIRAYGVEEITAVSRARLPPLAKEIFPIIRLAAPWMETEAGHVELLIGLDHRQWLPVHVEDCWNPDDDMRLMKSAFGHRYMITGGWGRDLLPPDNSPEDQA
B570J13880_109316	B570J13880_1093161	F005695	KEKRKYHMRVVLRNEERWYLNVLVSETARQSRILSTAAIMLGRESVHDKRIHFRDMNGTEVSIAVDVVSTMEELLVNENPCHGLPKPHMVLCPEDERCIRKTMLTGWKSEADLSRGWASQGKRKSQPTSGAGEKEPGEKVFLKHLKVNTKPCSMRVSALFNENAPDTLIGYGAATILGLKGGRTRRQVTTEGGSRGRS
B570J13880_109764	B570J13880_1097641	F002931	EEDLTGTVPEEEARTQDGADGGYDEEPSPYEHPDEDRPRLCQQLIQLEIDGELTTLHTLYDWETPNTLVRTEGARRIGLQGVRIPKQAIKGYQGVGTITDSVYHVPLVDADGNVQVIRAYGVEEITVVSRAGLPPLAKEIFPIIRLAAPWMETEAGHVELLIGLDHKQWLPVHVEDCWNPDDDMRLVRSAF
B570J13880_109881	B570J13880_1098812	F035561	FLYIFSFYLFLGNMDLVTPNFRLAESVLETLSESQLECYICQHGPREFETQKLRDIVAANMQPDIYPKRKDVYLALAIYLYRAGHTRTVLNALQFEGFVPGPSPDRRMDESTDFGQPRWWSSYEWALGGRRPTFRGKTIWNWQPLLGLGQK*
B570J13880_110032	B570J13880_1100321	F071949	YSTPGSDDSIFPQNYEQIKNDPIGKILLDLAHDQTMLFKKCKLENMNVNIHELCDNFEKFMELGELQRQRHSARTQNEMEERLIKKKLSSHLINQAFRPPVFAKTPALTSIGKTSDILKLFPHRNNKFSGNPKDSLSLLEFITSLNAAQEQAQLTEKEFRSMLLACTTGPAHQFLIDWMEDNDEDM
B570J13880_110305	B570J13880_1103051	F004315	MKVVSDVLLLLCLHKFDLRVTAEAGQASACLYSGARLYKGPGQANLSQSAATRSTGNISVRIQKVDHSNTRGIVSSLFFSRSEILLHLVYIINIL*
B570J13880_110852	B570J13880_1108521	F079597	LKVVTSEKIGGSGVTSTLGTWYGGVVMGVLLSFNEAAILYRDFNSAPSQKQNIIVFAANNSRCCECHVAPTIIL*
B570J13880_111395	B570J13880_1113951	F015963	EDVRVEGAGGASSLHALYDWGATVTLVTHAAAAKAGLEKRAQVAAAVAGLGGCCTTVDSYYMVPVVDGDDAVRVVKALGVDHIATLAAADITKDIVTRIPRTEGFVEKLARPARDVEMLIGMDNQGWMPVHVDSSQLASDNLRLMQSMLSPRCILMGSIEKPERGRVT

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300001260: Freshwater microbial communities from Lake Mendota, WI - 26JUN2008 deep hole epilimnion

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences