NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300001328

3300001328: Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A10-65cm)- 6 month illumina



Overview

Basic Information
IMG/M Taxon OID3300001328 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0083722 | Gp0055454 | Ga0011059
Sample NamePermafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A10-65cm)- 6 month illumina
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of Tennessee
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size31743305
Sequencing Scaffolds14
Novel Protein Genes15
Associated Families15

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium3
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes3
All Organisms → cellular organisms → Bacteria → Terrabacteria group3
All Organisms → cellular organisms → Bacteria4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NamePermafrost And Active Layer Microbial Communities From Mcgill Arctic Research Station (Mars)
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost → Permafrost And Active Layer Microbial Communities From Mcgill Arctic Research Station (Mars)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biome → active permafrost layer → permafrost
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationAxel Heiberg Island, Nunavut, Canada
CoordinatesLat. (o)79.26Long. (o)-90.46Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004265Metagenome / Metatranscriptome446Y
F005593Metagenome / Metatranscriptome395Y
F005729Metagenome / Metatranscriptome392Y
F009111Metagenome / Metatranscriptome323Y
F011454Metagenome / Metatranscriptome291Y
F022949Metagenome / Metatranscriptome212Y
F032208Metagenome180Y
F034679Metagenome174Y
F036989Metagenome / Metatranscriptome169Y
F037167Metagenome / Metatranscriptome168Y
F039883Metagenome / Metatranscriptome163Y
F043699Metagenome156Y
F047390Metagenome150Y
F073917Metagenome / Metatranscriptome120Y
F077992Metagenome117Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
A1065W6_1003558All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium766Open in IMG/M
A1065W6_1004101All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes507Open in IMG/M
A1065W6_1005196All Organisms → cellular organisms → Bacteria → Terrabacteria group909Open in IMG/M
A1065W6_1008566All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium773Open in IMG/M
A1065W6_1009574All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium708Open in IMG/M
A1065W6_1009700All Organisms → cellular organisms → Bacteria1023Open in IMG/M
A1065W6_1018733All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria516Open in IMG/M
A1065W6_1020472All Organisms → cellular organisms → Bacteria → Terrabacteria group688Open in IMG/M
A1065W6_1020535All Organisms → cellular organisms → Bacteria → Terrabacteria group618Open in IMG/M
A1065W6_1031817All Organisms → cellular organisms → Bacteria818Open in IMG/M
A1065W6_1050898All Organisms → cellular organisms → Bacteria579Open in IMG/M
A1065W6_1052572All Organisms → cellular organisms → Bacteria622Open in IMG/M
A1065W6_1061735All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes545Open in IMG/M
A1065W6_1103365All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes509Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
A1065W6_1003558A1065W6_10035581F077992MWRVVAMAVAIAVGLFPSPAAGSSAWGSPRYGDPPGWCTNHSDMWTAKIVTNDPLVGMNPERDTFYGFHPNPGYDDWYGYFYGDFRGTAGDASGWVRLLHEDYPNHYHWNFADNGWA
A1065W6_1004101A1065W6_10041011F034679MIRYASGLLLVACVAVPCVASAQAPWRQVYKDSDITVVFDTASVVLQSPGTWTTVTSWDYSRARVLENKKQYTRLVERAYVRCSPVRVKRVRSTVYAINNVLVRDEGEVDPRDQAHMVWDRPKPGTAGKNAFE
A1065W6_1005196A1065W6_10051961F039883LGGALVAGAVIVQHGDDLFAGELTLPEKAPARRIVLPPVLKAWQRSGQPRCLLLAGRDVSGRTWDFVDETKLIKDPRRWVAGQLRELRLQGVVDFPGLTGGKS*
A1065W6_1008566A1065W6_10085662F022949VPNLNHIWQRFLLASSLLIGLAIGVAATIFGYSNLTTVDVNWSVIHIDGVPLWTVAVVPVALTLIAGTLYHLMDS
A1065W6_1009574A1065W6_10095741F037167MSQPMGSVGPSIAWVKVDVLTAYQRITAEMQVRGRLRETMNDSESLFHLRNVSAEPLMPGAVPLNGVPEGTFNKMAVCGIRTIDAEPPLPDQPEVIRRFVMFQGTSFMVTGAAEFPKLSD
A1065W6_1009700A1065W6_10097001F073917LELVLNQRVPGAPLDRGAVESILGHKMSLTVNFDDTRPEDATLAGSLVLQRDPSSQVSRGANELARLIAGKLKLDG*
A1065W6_1018733A1065W6_10187331F005593FCPEGRAGLHTFSNPTEEPARILAISAGSFPDVVAYPEHGYAWVATRDPDPELLARGGDPGIIARFEIPIE*
A1065W6_1020472A1065W6_10204721F011454MPSEADLGRMIRITVDEWSPRRGPDWSDLMVRIAGTGPPAWLLYTTASAALVIILVAAYLIGSALQLGALAPQSIPGHIQP*
A1065W6_1020535A1065W6_10205352F036989GVFSDPKNRWAALAQSTLTILATAFALSASFLIPILSIQVRGQISLAVAVFSIYRGIRVWWPVFRREDRDRRHMFVQSFWLLLLPFAVYVYLISGAVGLLRGDTTAILNVGGAVLSMFIVALRNTWRLVVNVEQDEPSVPSKDSPNPTGQHGNARPGMTKE*
A1065W6_1031817A1065W6_10318172F004265MPRAMRSWNLLEIDTPEGSRSPVVLHSGEARAVLIGLAPGQALREHEVKEQAFVTVVEGRVRVEAGGETTEAE
A1065W6_1037011A1065W6_10370111F032208MLRAAGIVALIVLAACNESPAKPSPSPTPIVAQGSWTQNLTFAGELSGHMSGIVPDVGGQKSQCTGGRTHNGETWADIFYGTVDVSGDVWGVVFQINNFRGPGTYQNSSVTVEVHNPDATKVWQSRSSDKITFVLDRSQQSGTVDAMLTNATTGKDGLQVTGHWNCRQ*
A1065W6_1050898A1065W6_10508981F009111MGVMALGIGVWVLVYLAGHRGLDPAALAIAGATILISWSFGLYVLIRRVRRGPQH*
A1065W6_1052572A1065W6_10525721F043699RVVLSIAVGDWSDGTNRADRCSATLEAWTEEDRVHMAFSDRAGSTWQELEVVSWQLTSAEAQAGPLREAFLRMADHIVYQDRRLRRALSRGARAQGL*
A1065W6_1061735A1065W6_10617351F005729MLKLLVMLASIANCAGGVVLIGTWATMWQRVPIIVLFIGGSLLIQGAYTILYLRGDLDRWGDLATGALFAGEGLSACVGAGGLIQGIIHNVNNADMEMAPVLAGLLM
A1065W6_1103365A1065W6_11033652F047390AATGVTFTINSVNGAQRTTTVSVRSISASLGGGKVIGDLQWRRSDLATWNSVTLTDAQVEQRIVVNKGLNDPWSNTIFFRMILNWTTDAPATYTASYQITLSQTVP*
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