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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300001377 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0090745 | Gp0055789 | Ga0012438 |
| Sample Name | Goat rumen fungal communities from Langston, Oklahoma, USA - Assemble1 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Cornell University |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 83468785 |
| Sequencing Scaffolds | 4 |
| Novel Protein Genes | 4 |
| Associated Families | 4 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 4 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Goat Rumen Microbial Communities From Langston University, Oklahoma, Usa |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Mammals → Digestive System → Foregut → Rumen → Goat Rumen → Goat Rumen Microbial Communities From Langston University, Oklahoma, Usa |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal proximal gut |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Langston, Oklahoma, USA | |||||||
| Coordinates | Lat. (o) | 35.453976 | Long. (o) | -97.515884 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002486 | Metagenome / Metatranscriptome | 555 | Y |
| F031714 | Metagenome / Metatranscriptome | 182 | Y |
| F056990 | Metagenome / Metatranscriptome | 137 | Y |
| F076635 | Metagenome / Metatranscriptome | 118 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| yes_1017911 | Not Available | 793 | Open in IMG/M |
| yes_1021995 | Not Available | 722 | Open in IMG/M |
| yes_1030112 | Not Available | 621 | Open in IMG/M |
| yes_1031285 | Not Available | 608 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| yes_1017911 | yes_10179111 | F002486 | IREHGDMLDVSINGKFQTVPKCTCGKCIVRRLRENLFTPFPYAKDLASTYKDDYDWKTNPKEGPEYNRSKHNSFEGAYKEHIPTSLISTAKMSYKPFKVREERKQKPEEEPYKIPFIGKSTYNRHYPDWGTSEPQGDKVPPPEEIIVPLRGIPNYKESYPRYDDKYYTNGEPLNFTKPTLKFDGELDPRTTYNEAFKPTDLGNKHYFPDDKLINGAKGENTALMSGPNAPGILGTTYRRDYIKYDDAMCKLRKWLNARNMRYLV |
| yes_1021995 | yes_10219952 | F031714 | EVVSGLTDILKNVLSKPKFEKSEIANRFCEFVDMLSSRSNGVLWSFARKVKDGEVLISFLKELATKGCISQIDKIFRSGGYRCPLVNQLSKYYETKEKFNELFKMLPEEYRDKLSGEIISYQDGDKDYAYPLIGGSALMGF* |
| yes_1030112 | yes_10301121 | F076635 | MIKRGSKVRVVKMDTAGGMDWQAKRLEGKVFTVRFIDSVGQIYLEETGIALIPGVDEYE |
| yes_1031285 | yes_10312851 | F056990 | ELLQFLNRRSSSGRFDPIISEKLFEVLSLDEMSNISVEEFINGFLQFEEEIRKNAELFSIKLAKEEEIYAQLSEEFRKYKEEKLNAEGLCEDAKVYGEITEIDIKRKLEGIKEIIIKVVFNEKSEELHFKIGDLNSANEMSNKTFEFKPTSRKDHFEFIMKGINDRNQVFDIGSKVFPLTEVSSHEEYLVQIVVPEIENEEQ |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |