Sample 3300001395

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300001395

3300001395: Goat rumen fungal communities from Langston, Oklahoma, USA - velvetAssemble

Overview

Basic Information
IMG/M Taxon OID	3300001395 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0090745 \| Gp0055790 \| Ga0012457
Sample Name	Goat rumen fungal communities from Langston, Oklahoma, USA - velvetAssemble
Sequencing Status	Permanent Draft
Sequencing Center	Cornell University
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	1577637560
Sequencing Scaffolds	13
Novel Protein Genes	13
Associated Families	8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1
Not Available	9
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea → Hymenostomatida → Tetrahymenina → Tetrahymenidae → Tetrahymena → Tetrahymena thermophila	1
All Organisms → cellular organisms → Eukaryota	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → unclassified Rikenellaceae → Rikenellaceae bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Goat Rumen Microbial Communities From Langston University, Oklahoma, Usa
Type	Host-Associated
Taxonomy	Host-Associated → Mammals → Digestive System → Foregut → Rumen → Goat Rumen → Goat Rumen Microbial Communities From Langston University, Oklahoma, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal proximal gut

Location Information
Location	Langston, Oklahoma, USA
Coordinates	Lat. (^o)	35.453976	Long. (^o)	-97.515884	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F015548	Metagenome / Metatranscriptome	254	Y
F015816	Metagenome / Metatranscriptome	252	Y
F035559	Metagenome / Metatranscriptome	172	N
F049305	Metagenome / Metatranscriptome	147	N
F058536	Metagenome	135	Y
F062278	Metagenome / Metatranscriptome	131	N
F100044	Metagenome / Metatranscriptome	103	N
F106163	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
yes_10089088	All Organisms → cellular organisms → Bacteria	4464	Open in IMG/M
yes_10433603	Not Available	645	Open in IMG/M
yes_10860132	Not Available	626	Open in IMG/M
yes_10942288	Not Available	562	Open in IMG/M
yes_11191977	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea → Hymenostomatida → Tetrahymenina → Tetrahymenidae → Tetrahymena → Tetrahymena thermophila	773	Open in IMG/M
yes_11423168	Not Available	740	Open in IMG/M
yes_11619525	All Organisms → cellular organisms → Eukaryota	606	Open in IMG/M
yes_11860731	Not Available	633	Open in IMG/M
yes_11892400	Not Available	900	Open in IMG/M
yes_11992805	Not Available	622	Open in IMG/M
yes_12139387	Not Available	596	Open in IMG/M
yes_12625626	Not Available	926	Open in IMG/M
yes_13074086	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → unclassified Rikenellaceae → Rikenellaceae bacterium	1159	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
yes_10089088	yes_100890882	F058536	MKTLALSELRRVAERTQMVTRKIPDEQGGFQMVQVQERIPWRVWYVAASNGDCIRGDECVTLSVELNGPGAYPSRLVQFTASGQTRRLRDVCILQANDFRLVL*
yes_10433603	yes_104336031	F015816	IYLERRRRSKHEQEGRDFICDFPNCGKSFLSQPALNNHKKTKHPELLEGQPKRGRGRPRKYPPKAAGDFESTKYEIFFNNSPRCPEEGKTINTLNVVKEVFELIYKGSHMDKLFSHPQSFEENPILDNLNKDSPISDKPKNTKSCDEVFYEYLKTFKDKTNEKYFALLIKFVLLFRECYDNSKTKDSKEEEKKPVTDHVSPEGLPDLCNEFYGEF
yes_10860132	yes_108601321	F015548	MGQEFHVDVMIEKNIIGIDSEKAKERVPQTVVFLIIIMQGYPQIPPEILTKSNFCSPSLMDGRDLMKEICPSWNSKSGFKTILEGFLPFLSRVINAKGYKFYGTFHLGATYNLKNFDNMI
yes_10942288	yes_109422881	F049305	MCAQKDEKLQIVAFSTNDDRQTPNDIINIFLGQQNHKILKKSKLAIAFSTQLKNKETRIMICSVLNLSKEYTGITDVNCYLLFIDLEKSDSIDRLKNIINYARDNCRLTKKIFVLGMVSGNEDEEIKFTKDDVTQILDEFKARYEYKEINLSKIKEISDIMIGIFDYSSQHPIDEDEEI
yes_11191977	yes_111919771	F015816	TQVINFLNYFFLNIIFYFSIERHRRSKHEQEGRIFACDCGKSFLSQPALNNHKKTKHPELLEGLPKRGRGRPRKYPPKTAGDFETTKYEVFFGSTNRAPEEGLTINTEEVVKEVFHFLYEGQYANKLFSHPTAYEENPILKNLVDNSYVPDKPKNEKTCDEVFYEYLHIFQSKTNKKYFSLLLKFVLLFRECYDISKTKDSKDEVKKAVTDTISPEGLPDLCNEFYGEFMEPNNFFGIDEPDEKNEIIEIIQHFCIW
yes_11423168	yes_114231681	F106163	MKRLLYLLPLALLLLAGCKEKGSFSNVEIGESWLCRLVFEDESFKDYVVTADVLYAGEDTSSRYKMVFYMPEGWDNSYPIFLDRYVPCDGPAWQAYQGMPVAEDALKEGNMIVVLVAYSEWTAIPDILLAEAFLKQHDADLPGDSRNILTAADFDFETAAYYDFE*
yes_11619525	yes_116195251	F035559	LLLSLLSFTLCEYSGVKAAITSNFFKILTKYDLNKILQNQTIIDTAEMSGQALFNYEVQVTNLWITYFKNPENVTIDQETTSDGLPQVKVTLTNVEVAIEIEHLYVKYGLISDNFYNADGDIKFSLIEGRYHFSSDGKLVLSEFNVEVEDLTIDVRKDFLNWLIGLFKGLIKSKVTDKLQELGATLQTKVNEIIENEFTVD
yes_11860731	yes_118607311	F106163	LLLLAGCKEKRSFTEVSCGEIFLSHIVFEDESFRDFTVVTDVLYAGEDTSSRYKMVFYLPEGWDQSYPLFLDRYVPHAGEAPWTAYQGFPAAEAALDRGDMIVVLVAYNDETAIPDVLLAEHFLKVHDDDLPGDSSKILTTAYFEFE*
yes_11892400	yes_118924001	F100044	EKDLFLKNYFPAFTSYLSLEKLEQKIPSYRYLNDELKRLEETSPESTIKHVMGKKKLLISKNAKQLCRDGIPIKHIRTILLKMFNVSFSKEDYENKRKEVLKGREFSEMGDQVPTFCDKSLSEILPFHYLNDKGLEALKEVLWLLNGVLPKLEYAPGIVGLSSILLLFLSKEETYELVRNVIEADLNPGEITNIRWHFRYTMDDNIKLYISVALAIVEISKQEIVQQFQLIEKHGLRRIKLVQELADKFLIDYINFIGIIKFLPFFLYEGAKGIYRFIYGIVALCHFKIEKKEEEKKEEE
yes_11992805	yes_119928052	F106163	GRKKHYFSNISTGETYLCAIGFDEDSQKDYTVVTDVLYAGTDTSSRYKMVFYMPDGWDDTYPLFLDKYVPIEGGQPWTAYKGSPVAEAALKEGNMIVVLVACDEETAIPDVLLAEEFLKKNDADLPGDSKIILTSAYFDFE*
yes_12139387	yes_121393871	F062278	FVTEINTSNNKYTLNDLYPYEIKNYLFSCSDLGTITVFDLGKPGQEKTTKELSFFNYYEAKIKIKSVLYDSDTNQVITGDNYGRLIFWSLKYGKPIHCTKVTPNGKGICKIRFIENSEEPNKLLLVSCLDNSIYFVKLPLKWVENEDIEKYEQVEIKVRSDLDAMMKIQDFLAKDEDYNSDEDSLNGWDYFANDAKEE
yes_12625626	yes_126256262	F106163	RLLIICLGLLLLAGCKEKRYFKEIPGDNWLCQIGFDDGSKREFWVVSDVLYAGEDSTSRFKMVFYMPDGWDDSYPVFLDRYVPENDYVSAYTAYQGMPVAEDALKMGNMIVVLVAYNEWTAIPDILLAEHFLKEHDDDIPGDSRNILTAADFDFEPVVEIE*
yes_13074086	yes_130740862	F106163	MLEYRDMKKFILFAAAALLLLTGCKEKRYFTTVTYGETWFAHIGFDDDSSVNFMVVPDVLYAGTDTSSRYKMMFYLPDGWDDTYPIFLDRYVPLEDDFSQPWQAYQGAPVAEAALHEGTMIVVLVAYDEWTAIPDILLAEDFLKKNDADLPGDSKNILTAAYFDFE*

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