NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300001399

3300001399: Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-3 shallow-072012



Overview

Basic Information
IMG/M Taxon OID3300001399 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0084162 | Gp0056272 | Ga0003464
Sample NameArctic peat soil from Barrow, Alaska - NGEE Surface sample 210-3 shallow-072012
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size12281009
Sequencing Scaffolds8
Novel Protein Genes10
Associated Families9

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales1
Not Available2
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2
All Organisms → cellular organisms → Bacteria → Acidobacteria1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameArctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)polar biomepolarpeat soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationBarrow Environmental Observatory site, Barrow, Alaska
CoordinatesLat. (o)71.2999Long. (o)-156.61Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002759Metagenome / Metatranscriptome532Y
F004387Metagenome / Metatranscriptome440Y
F025088Metagenome / Metatranscriptome203Y
F035555Metagenome / Metatranscriptome172Y
F048671Metagenome / Metatranscriptome148Y
F072806Metagenome / Metatranscriptome121Y
F077984Metagenome / Metatranscriptome117Y
F079370Metagenome / Metatranscriptome116Y
F098278Metagenome104Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
JGI20178J14841_100011All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia2876Open in IMG/M
JGI20178J14841_100090All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia1766Open in IMG/M
JGI20178J14841_100231All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales1418Open in IMG/M
JGI20178J14841_101094Not Available664Open in IMG/M
JGI20178J14841_101146All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium653Open in IMG/M
JGI20178J14841_101761All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium559Open in IMG/M
JGI20178J14841_102118All Organisms → cellular organisms → Bacteria → Acidobacteria528Open in IMG/M
JGI20178J14841_102468Not Available502Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
JGI20178J14841_100011JGI20178J14841_1000112F035555VHPMSQLAFDLDDVAPXVPPPVIGRPPDDLPDRDREAAVAKLASLIARYHTAEGSADDHQ
JGI20178J14841_100090JGI20178J14841_1000901F035555VHPMSQLAFDLDDVAPEPPPVIGRPPDDLPDRDREAAVAKLASLIARYHTAEGSADDHQ*
JGI20178J14841_100231JGI20178J14841_1002312F002759VTSGWITQADRSRWQQQAAAELAVILAAHPDIPVIAWTVTASGGALSGQVLAPAAGRRGLFGQWRQALELDGATETPSRNGTPVYLHARGVRSGVAVSITATVFDGAEDSR*
JGI20178J14841_100639JGI20178J14841_1006393F098278VAAPGGLQGRELAVLGWTTDDDSGEVALLCRLVDGSAGEIPARWTDLPVRVESQRAVGGVGSPAGWRLLLARGERLAGRRG
JGI20178J14841_101094JGI20178J14841_1010941F077984GIQTKGLDPPPRVVEAGCLQRAWCALTARVKTLTDVLGQLIPKPVSDVVSFWAHLRQSFDSVPKLLCFLSQHHHISLLGNYLCLQPPR*
JGI20178J14841_101146JGI20178J14841_1011461F025088MICPVEIASDLSAFQAARVGEHGRHVGLLEGRGGAGNEDT
JGI20178J14841_101358JGI20178J14841_1013582F079370MAQEVRSPAAYAADIDAAKDRMISFVDGCTDEDWHAAPVDGDPRPVAVIVDHVAHAYEYLAGWIR
JGI20178J14841_101761JGI20178J14841_1017612F004387PTDGGGNGHAQTAKSNGSAAAGSGDDLDARILGLEKAVGTALFRGILREYGRANQPKLIRDAAIKGKVLQMLESATRGLDRLEAVTQRLDPNTVKGLLDKLQVPPLNEIADIKTLQHVVLGLEELAGSNRNSAA*
JGI20178J14841_102118JGI20178J14841_1021182F072806MGRTESLNLKNDYERACGWYGHFNKSEMALFSECTDRYAQKLLDTADIVREAILRQLRESVV
JGI20178J14841_102468JGI20178J14841_1024682F048671MSEILAEAGRITGLGPEISGKITFGLQSAYAEQTGQEPTRFVAPAGQMADLNDEDLVVVQFNRIDNGTVSGPLPVVALSRA*

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