Basic Information | |
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IMG/M Taxon OID | 3300001399 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0084162 | Gp0056272 | Ga0003464 |
Sample Name | Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-3 shallow-072012 |
Sequencing Status | Permanent Draft |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 12281009 |
Sequencing Scaffolds | 8 |
Novel Protein Genes | 10 |
Associated Families | 9 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia | 2 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales | 1 |
Not Available | 2 |
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 2 |
All Organisms → cellular organisms → Bacteria → Acidobacteria | 1 |
Ecosystem Assignment (GOLD) | |
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Name | Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa |
Type | Environmental |
Taxonomy | Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | polar biome → polar → peat soil |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
Location Information | ||||||||
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Location | Barrow Environmental Observatory site, Barrow, Alaska | |||||||
Coordinates | Lat. (o) | 71.2999 | Long. (o) | -156.61 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F002759 | Metagenome / Metatranscriptome | 532 | Y |
F004387 | Metagenome / Metatranscriptome | 440 | Y |
F025088 | Metagenome / Metatranscriptome | 203 | Y |
F035555 | Metagenome / Metatranscriptome | 172 | Y |
F048671 | Metagenome / Metatranscriptome | 148 | Y |
F072806 | Metagenome / Metatranscriptome | 121 | Y |
F077984 | Metagenome / Metatranscriptome | 117 | Y |
F079370 | Metagenome / Metatranscriptome | 116 | Y |
F098278 | Metagenome | 104 | Y |
Scaffold | Taxonomy | Length | IMG/M Link |
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JGI20178J14841_100011 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia | 2876 | Open in IMG/M |
JGI20178J14841_100090 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia | 1766 | Open in IMG/M |
JGI20178J14841_100231 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales | 1418 | Open in IMG/M |
JGI20178J14841_101094 | Not Available | 664 | Open in IMG/M |
JGI20178J14841_101146 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 653 | Open in IMG/M |
JGI20178J14841_101761 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 559 | Open in IMG/M |
JGI20178J14841_102118 | All Organisms → cellular organisms → Bacteria → Acidobacteria | 528 | Open in IMG/M |
JGI20178J14841_102468 | Not Available | 502 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
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JGI20178J14841_100011 | JGI20178J14841_1000112 | F035555 | VHPMSQLAFDLDDVAPXVPPPVIGRPPDDLPDRDREAAVAKLASLIARYHTAEGSADDHQ |
JGI20178J14841_100090 | JGI20178J14841_1000901 | F035555 | VHPMSQLAFDLDDVAPEPPPVIGRPPDDLPDRDREAAVAKLASLIARYHTAEGSADDHQ* |
JGI20178J14841_100231 | JGI20178J14841_1002312 | F002759 | VTSGWITQADRSRWQQQAAAELAVILAAHPDIPVIAWTVTASGGALSGQVLAPAAGRRGLFGQWRQALELDGATETPSRNGTPVYLHARGVRSGVAVSITATVFDGAEDSR* |
JGI20178J14841_100639 | JGI20178J14841_1006393 | F098278 | VAAPGGLQGRELAVLGWTTDDDSGEVALLCRLVDGSAGEIPARWTDLPVRVESQRAVGGVGSPAGWRLLLARGERLAGRRG |
JGI20178J14841_101094 | JGI20178J14841_1010941 | F077984 | GIQTKGLDPPPRVVEAGCLQRAWCALTARVKTLTDVLGQLIPKPVSDVVSFWAHLRQSFDSVPKLLCFLSQHHHISLLGNYLCLQPPR* |
JGI20178J14841_101146 | JGI20178J14841_1011461 | F025088 | MICPVEIASDLSAFQAARVGEHGRHVGLLEGRGGAGNEDT |
JGI20178J14841_101358 | JGI20178J14841_1013582 | F079370 | MAQEVRSPAAYAADIDAAKDRMISFVDGCTDEDWHAAPVDGDPRPVAVIVDHVAHAYEYLAGWIR |
JGI20178J14841_101761 | JGI20178J14841_1017612 | F004387 | PTDGGGNGHAQTAKSNGSAAAGSGDDLDARILGLEKAVGTALFRGILREYGRANQPKLIRDAAIKGKVLQMLESATRGLDRLEAVTQRLDPNTVKGLLDKLQVPPLNEIADIKTLQHVVLGLEELAGSNRNSAA* |
JGI20178J14841_102118 | JGI20178J14841_1021182 | F072806 | MGRTESLNLKNDYERACGWYGHFNKSEMALFSECTDRYAQKLLDTADIVREAILRQLRESVV |
JGI20178J14841_102468 | JGI20178J14841_1024682 | F048671 | MSEILAEAGRITGLGPEISGKITFGLQSAYAEQTGQEPTRFVAPAGQMADLNDEDLVVVQFNRIDNGTVSGPLPVVALSRA* |
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