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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300001477 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0053113 | Gp0055565 | Ga0012971 |
| Sample Name | Sheep rumen microbial communities from New Zealand - Rank02_low |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 220428912 |
| Sequencing Scaffolds | 3 |
| Novel Protein Genes | 3 |
| Associated Families | 3 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 3 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Sheep Rumen Microbial Communities From New Zealand From High And Low Methane Emitting Sheep |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Mammals → Digestive System → Foregut → Rumen → Sheep Rumen → Sheep Rumen Microbial Communities From New Zealand From High And Low Methane Emitting Sheep |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal proximal gut |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Palmerston North, New Zealand | |||||||
| Coordinates | Lat. (o) | -40.352 | Long. (o) | 175.608 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F019573 | Metagenome / Metatranscriptome | 229 | Y |
| F032474 | Metagenome / Metatranscriptome | 180 | Y |
| F083362 | Metagenome / Metatranscriptome | 113 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| rank02_1106661 | Not Available | 507 | Open in IMG/M |
| rank02_1159523 | Not Available | 513 | Open in IMG/M |
| rank02_1177877 | Not Available | 534 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| rank02_1106661 | rank02_11066611 | F019573 | MSYIPQEFGTSSVQAEPLNLGPNIFPAQPGQLPPEAYQSQTPTVRTLPPKIVKNTLPPQYKTNTLPPKVVTTRLQPIFPPGTAQTSIPQF* |
| rank02_1159523 | rank02_11595231 | F083362 | MNSQYMKSLSNREILRKDDPNDVYKQPIPLDMINKFVGLDSRILLQDDTVQKQAFDQSYKNFWSFVDFNMKFDGNMLKNVNTCNHLFSQQVKPAHSMTVGNQCSGVQMTYQEARERANKLSQ* |
| rank02_1177877 | rank02_11778772 | F032474 | MEVQKNIKQCEICKDREAITLCFDCHFYFCEACYKFVHDIKKNSSHKKEKIDLFVPIDTTCPDHGRVPMNLFCIDDKGNIYYNNNIILI* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |