NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300001584

3300001584: Marine microbial communities from the Deep Pacific Ocean - MP2097



Overview

Basic Information
IMG/M Taxon OID3300001584 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0053074 | Gp0054393 | Ga0000765
Sample NameMarine microbial communities from the Deep Pacific Ocean - MP2097
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size31712517
Sequencing Scaffolds21
Novel Protein Genes22
Associated Families21

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Predicted Viral3
Not Available15
All Organisms → Viruses → environmental samples → uncultured Mediterranean phage1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium1
All Organisms → cellular organisms → Bacteria → Thermotogae → Thermotogae → Kosmotogales → Kosmotogaceae → Mesotoga → Mesotoga prima1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameDeep Ocean Microbial Communities From The Global Malaspina Expedition
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationNorth Pacific Ocean
CoordinatesLat. (o)14.53Long. (o)-118.77Alt. (m)N/ADepth (m)294
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004630Metagenome / Metatranscriptome430Y
F007138Metagenome357Y
F012582Metagenome / Metatranscriptome279Y
F013235Metagenome273N
F013468Metagenome271Y
F019844Metagenome227N
F022427Metagenome / Metatranscriptome214N
F030885Metagenome / Metatranscriptome184Y
F044546Metagenome154Y
F049233Metagenome / Metatranscriptome147N
F050662Metagenome145N
F056681Metagenome137Y
F063767Metagenome129N
F065937Metagenome / Metatranscriptome127N
F071316Metagenome122Y
F074478Metagenome / Metatranscriptome119N
F077905Metagenome117Y
F086697Metagenome / Metatranscriptome110N
F090499Metagenome108N
F096046Metagenome / Metatranscriptome105Y
F096068Metagenome / Metatranscriptome105N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
JGI12074J15755_1000984All Organisms → Viruses → Predicted Viral2621Open in IMG/M
JGI12074J15755_1001448All Organisms → Viruses → Predicted Viral2070Open in IMG/M
JGI12074J15755_1002762Not Available1409Open in IMG/M
JGI12074J15755_1002973Not Available1344Open in IMG/M
JGI12074J15755_1003604All Organisms → Viruses → environmental samples → uncultured Mediterranean phage1195Open in IMG/M
JGI12074J15755_1004053All Organisms → Viruses → Predicted Viral1104Open in IMG/M
JGI12074J15755_1004178Not Available1083Open in IMG/M
JGI12074J15755_1004228Not Available1075Open in IMG/M
JGI12074J15755_1004395Not Available1049Open in IMG/M
JGI12074J15755_1005588Not Available895Open in IMG/M
JGI12074J15755_1007019All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium766Open in IMG/M
JGI12074J15755_1007063Not Available762Open in IMG/M
JGI12074J15755_1007965Not Available706Open in IMG/M
JGI12074J15755_1008058Not Available701Open in IMG/M
JGI12074J15755_1009323Not Available635Open in IMG/M
JGI12074J15755_1009542Not Available625Open in IMG/M
JGI12074J15755_1009879Not Available612Open in IMG/M
JGI12074J15755_1010561All Organisms → cellular organisms → Bacteria → Thermotogae → Thermotogae → Kosmotogales → Kosmotogaceae → Mesotoga → Mesotoga prima586Open in IMG/M
JGI12074J15755_1010647Not Available583Open in IMG/M
JGI12074J15755_1011270Not Available564Open in IMG/M
JGI12074J15755_1013289Not Available510Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
JGI12074J15755_1000984JGI12074J15755_10009845F030885MKHITDPSISIINSSFTKGVALPYTVQMMLNDVDNHKXFRKMMSEKFYXKDISIRISKYINEASIHFRNEEDVAEFLLLVGE*
JGI12074J15755_1001448JGI12074J15755_10014481F096046ACGGIQGHFGVTPVTFCEWCYGSIYDMVEQDIRDNIREQMNEEDKEDIKTILDAVGIDYKIVENAYVNKQRFFNFRFDEPCGMSRK*
JGI12074J15755_1002519JGI12074J15755_10025191F096068MALYEDIVLFCKRELNIPLDILISVEQADLSEDSVKGWAIDS
JGI12074J15755_1002762JGI12074J15755_10027623F077905TDFYRFLPIFRTFLGDFNPQKLPSRGLRTLWEWKNRVLLEEYYIFNVAIPLEVQREQSYETQ*
JGI12074J15755_1002973JGI12074J15755_10029731F013235KIMSTRLKTKFKNNKQGWTSKLETPRGVNTPYIGSYMNSKLGDVKVSNKSLETFYGDKIKP*
JGI12074J15755_1003604JGI12074J15755_10036042F022427SGLAGAGGTYDIDQTSTGTINLDVNSASANVSIEQTSSGTVNIDADGGASFTADIDQDNASTLSLHHDGASGDYVILQTGGSGDIIDLEVNGASANVDIIQRD*
JGI12074J15755_1004053JGI12074J15755_10040531F044546PHTKQRHKPPKYCSQCKREVYHTTHSASSYWVDWYGTELKPICVDCYKR*
JGI12074J15755_1004178JGI12074J15755_10041782F056681MNGAIYALRLKLSDFLNDPLESLVVDKIHEIYKIHTFKLQLWYDEGEVAAKDLKSFIEKYESILHYKTTIRPNRVADHAQFTWYNIIHG
JGI12074J15755_1004228JGI12074J15755_10042282F019844VLHILKDFINRLFGFKDKKINKPKLTLVVNKTDNQEGKSENAIFSIIEEQFTFEEDISEEYRNELKIHLIESIENKVHPWDFEKNLDFKLKEPDKIYYLYMYYVLYIDIFEQDLFNKFIKLWYENNLDDTTKSDDELNNTALRLLKYDILGFNLINGSKEEPIKELKEV
JGI12074J15755_1004395JGI12074J15755_10043951F049233MKITETDYQRKVLGDIGEKIVGNYMSRIGRTVEMSTDPFDSEKDMIVNGKPLEVKTQVPYCLEKSFTIRKNQLNKCLNVDYFVIVQAPCEYLNEAAIWKVKKGFTYNTVKLKGGGERLSIPMYQTNVIKKMDIVGEDKDLLRKYSTDYGG*
JGI12074J15755_1005588JGI12074J15755_10055881F004630MDGLDEXYGHRKLMSEXYKDDGSVAKIYQVINGMDGEHSFFSITYKDAAGSRITHEDFKFKSLRYVEDAAEN
JGI12074J15755_1007019JGI12074J15755_10070192F071316NFIKTFFLSLPVLFLMKFDLLSFRSKKTKLKKNKNFIWYLRHDD*
JGI12074J15755_1007063JGI12074J15755_10070632F050662NANEIFERIKSAGGEYALFAVEDTGYEKLQINFTDIRNKLAEQRQLLLAYREYYEPVVKSE*
JGI12074J15755_1007965JGI12074J15755_10079651F074478NGSKEEPIKELKEVVSDSFDEAMFNTKSDNLPLLLKAWKALEEKVLLEDKEKLKVN*
JGI12074J15755_1008058JGI12074J15755_10080581F063767GCSLGDDRPLFCKLYPLVENKSNRLVINNWGYIHCPKPMNYELDKVVDGKYHYKIKPEVRKHNKREELILDDKIENVVKQIWLQSKNSIIQRYGQEFYERIKMEMKQTIKHEFF*
JGI12074J15755_1009323JGI12074J15755_10093231F086697QDLFNKYTKLWYENNLDDTTKSDDELNNEALRLLKYDTLGFNLINGSKEEPIKELKEVVSDSFDEAMFNTKSDNLPLLLKAWKAFEEKALLEEKKKLKVH*
JGI12074J15755_1009542JGI12074J15755_10095422F007138MTNKTITLTEPYPSDFKPDMIVEGIQQYFESHSLYVARMLSGTKWGYHEKYPEDLIVWNANVLIPDYGKVWYGDLNLTQDYILLKSIAESLDTTLYILWEMDARFGEEMKPIDELIKKAAWNTDELKPTKEWYKNKMDKKYNG*
JGI12074J15755_1009879JGI12074J15755_10098792F090499VGELNXLPVTEVLENVKKSHANKYVRAIETLKGICDHNAGWIKENQ*
JGI12074J15755_1010561JGI12074J15755_10105611F019844VLRNLKNLINRLFGFKDKKINKPKLTLVVNNTDNQEGKSENDYFSYHEEHFTFEEDISEEYRNELKNHLKESLENKVHPWDFEKNLDFKLKEPDKIYYLFMYYLMYIDIFEQDLFNKYTKLWYENNLDDTTKSDDEINNAALRLLKYDILGFNLINGSKEEPIKELKEV
JGI12074J15755_1010647JGI12074J15755_10106472F065937MFNKLLAAAAAMLLSATTFAGISLTGEYEGTLDSHGTYTQDIETTLKGTSGNSAVTVVLDEAFEVDDIYVETTVGVLTFKLGDYSGSDPDVTKLGVTATVGDYTVGLNQESGGSTTIDVGANLGG
JGI12074J15755_1011270JGI12074J15755_10112701F012582KHLSATMIHWAEENKIRTKRNGNYEIPQRNGIDWKFDFKFVTKLDSMLADGLDDKLKKSEMKMCNELYSYYSQCYMMK*
JGI12074J15755_1013289JGI12074J15755_10132891F013468MPSTHTWNALKQVGLIPKQNKILEGNINPQLKIELTGVEDETV*
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