Sample 3300001632

3300001632: Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF001

Overview

Basic Information
IMG/M Taxon OID	3300001632 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0085736 \| Gp0057252 \| Ga0003840
Sample Name	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF001
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	33980765
Sequencing Scaffolds	60
Novel Protein Genes	66
Associated Families	64

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4
Not Available	22
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	8
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	4
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	1
All Organisms → cellular organisms → Bacteria	5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1
All Organisms → cellular organisms → Bacteria → Acidobacteria	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Acidothermales → unclassified Acidothermales → Acidothermales bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → Eurotiomycetes → Eurotiomycetidae → Onygenales → Onygenaceae → Coccidioides → Coccidioides immitis	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	forest biome → land → forest soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Harvard Forest LTER, Petersham, MA, USA
Coordinates	Lat. (^o)	42.532967	Long. (^o)	-72.209488	Alt. (m)	N/A	Depth (m)	0 to .1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000042	Metagenome / Metatranscriptome	3762	Y
F000407	Metagenome / Metatranscriptome	1172	Y
F000579	Metagenome / Metatranscriptome	1011	Y
F000955	Metagenome / Metatranscriptome	822	Y
F001420	Metagenome / Metatranscriptome	698	Y
F002208	Metagenome / Metatranscriptome	583	Y
F003697	Metagenome / Metatranscriptome	473	Y
F004436	Metagenome / Metatranscriptome	438	Y
F004980	Metagenome / Metatranscriptome	416	Y
F005595	Metagenome / Metatranscriptome	395	Y
F006628	Metagenome / Metatranscriptome	368	Y
F006800	Metagenome / Metatranscriptome	364	Y
F007658	Metagenome / Metatranscriptome	347	Y
F008215	Metagenome / Metatranscriptome	337	Y
F008279	Metagenome / Metatranscriptome	336	Y
F008321	Metagenome / Metatranscriptome	335	Y
F009897	Metagenome / Metatranscriptome	311	Y
F012710	Metagenome / Metatranscriptome	278	Y
F012840	Metagenome / Metatranscriptome	277	Y
F013078	Metagenome / Metatranscriptome	274	Y
F013552	Metagenome / Metatranscriptome	270	Y
F017014	Metagenome / Metatranscriptome	243	Y
F017737	Metagenome / Metatranscriptome	239	Y
F019956	Metagenome / Metatranscriptome	226	Y
F024745	Metagenome / Metatranscriptome	204	Y
F025106	Metagenome / Metatranscriptome	203	Y
F026357	Metagenome / Metatranscriptome	198	Y
F027336	Metagenome / Metatranscriptome	195	Y
F030165	Metagenome / Metatranscriptome	186	Y
F032465	Metagenome / Metatranscriptome	180	Y
F033574	Metagenome / Metatranscriptome	177	Y
F034637	Metagenome / Metatranscriptome	174	Y
F035880	Metagenome	171	Y
F035998	Metagenome / Metatranscriptome	171	Y
F037850	Metagenome / Metatranscriptome	167	Y
F038345	Metagenome / Metatranscriptome	166	Y
F041884	Metagenome / Metatranscriptome	159	Y
F041946	Metagenome / Metatranscriptome	159	Y
F042044	Metagenome / Metatranscriptome	159	Y
F042998	Metagenome / Metatranscriptome	157	Y
F049817	Metagenome / Metatranscriptome	146	Y
F050790	Metagenome / Metatranscriptome	145	Y
F052930	Metagenome / Metatranscriptome	142	Y
F055947	Metagenome / Metatranscriptome	138	Y
F056007	Metagenome / Metatranscriptome	138	Y
F056014	Metagenome / Metatranscriptome	138	Y
F057540	Metagenome / Metatranscriptome	136	Y
F061934	Metagenome / Metatranscriptome	131	Y
F062923	Metagenome	130	Y
F063865	Metagenome / Metatranscriptome	129	Y
F063891	Metagenome / Metatranscriptome	129	Y
F065974	Metagenome / Metatranscriptome	127	Y
F070439	Metagenome / Metatranscriptome	123	Y
F075831	Metagenome / Metatranscriptome	118	Y
F076422	Metagenome	118	Y
F077624	Metagenome / Metatranscriptome	117	Y
F080280	Metagenome / Metatranscriptome	115	Y
F084577	Metagenome	112	Y
F087491	Metagenome / Metatranscriptome	110	Y
F089375	Metagenome	109	Y
F092503	Metagenome / Metatranscriptome	107	Y
F101524	Metagenome / Metatranscriptome	102	Y
F101947	Metagenome / Metatranscriptome	102	Y
F105604	Metagenome / Metatranscriptome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
JGI20235J16296_1000241	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1550	Open in IMG/M
JGI20235J16296_1000311	Not Available	1467	Open in IMG/M
JGI20235J16296_1000438	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1351	Open in IMG/M
JGI20235J16296_1000547	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1266	Open in IMG/M
JGI20235J16296_1000565	Not Available	1259	Open in IMG/M
JGI20235J16296_1000733	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1169	Open in IMG/M
JGI20235J16296_1001121	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1031	Open in IMG/M
JGI20235J16296_1001149	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1023	Open in IMG/M
JGI20235J16296_1001180	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1016	Open in IMG/M
JGI20235J16296_1001428	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	960	Open in IMG/M
JGI20235J16296_1001517	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	944	Open in IMG/M
JGI20235J16296_1001576	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	934	Open in IMG/M
JGI20235J16296_1001667	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	918	Open in IMG/M
JGI20235J16296_1002246	All Organisms → cellular organisms → Bacteria	833	Open in IMG/M
JGI20235J16296_1002336	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	822	Open in IMG/M
JGI20235J16296_1002357	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	820	Open in IMG/M
JGI20235J16296_1002412	Not Available	813	Open in IMG/M
JGI20235J16296_1002629	Not Available	792	Open in IMG/M
JGI20235J16296_1003191	Not Available	745	Open in IMG/M
JGI20235J16296_1003207	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	744	Open in IMG/M
JGI20235J16296_1003215	Not Available	743	Open in IMG/M
JGI20235J16296_1003423	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	729	Open in IMG/M
JGI20235J16296_1003697	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	711	Open in IMG/M
JGI20235J16296_1003848	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	703	Open in IMG/M
JGI20235J16296_1004237	All Organisms → cellular organisms → Bacteria	681	Open in IMG/M
JGI20235J16296_1004580	All Organisms → cellular organisms → Bacteria → Acidobacteria	663	Open in IMG/M
JGI20235J16296_1004800	Not Available	654	Open in IMG/M
JGI20235J16296_1004854	Not Available	651	Open in IMG/M
JGI20235J16296_1005084	All Organisms → cellular organisms → Bacteria	641	Open in IMG/M
JGI20235J16296_1005104	All Organisms → cellular organisms → Bacteria → Acidobacteria	640	Open in IMG/M
JGI20235J16296_1005648	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Acidothermales → unclassified Acidothermales → Acidothermales bacterium	619	Open in IMG/M
JGI20235J16296_1005858	Not Available	611	Open in IMG/M
JGI20235J16296_1006291	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	597	Open in IMG/M
JGI20235J16296_1006317	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	596	Open in IMG/M
JGI20235J16296_1006950	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	578	Open in IMG/M
JGI20235J16296_1007038	Not Available	576	Open in IMG/M
JGI20235J16296_1007312	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	569	Open in IMG/M
JGI20235J16296_1007323	Not Available	569	Open in IMG/M
JGI20235J16296_1007358	Not Available	568	Open in IMG/M
JGI20235J16296_1007523	Not Available	563	Open in IMG/M
JGI20235J16296_1007709	Not Available	559	Open in IMG/M
JGI20235J16296_1007716	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	559	Open in IMG/M
JGI20235J16296_1007993	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	553	Open in IMG/M
JGI20235J16296_1008258	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	547	Open in IMG/M
JGI20235J16296_1008401	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	544	Open in IMG/M
JGI20235J16296_1008511	All Organisms → cellular organisms → Bacteria → Acidobacteria	541	Open in IMG/M
JGI20235J16296_1008517	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → Eurotiomycetes → Eurotiomycetidae → Onygenales → Onygenaceae → Coccidioides → Coccidioides immitis	541	Open in IMG/M
JGI20235J16296_1009021	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	532	Open in IMG/M
JGI20235J16296_1009081	Not Available	530	Open in IMG/M
JGI20235J16296_1009124	All Organisms → cellular organisms → Bacteria	530	Open in IMG/M
JGI20235J16296_1009539	All Organisms → cellular organisms → Bacteria	522	Open in IMG/M
JGI20235J16296_1010040	Not Available	513	Open in IMG/M
JGI20235J16296_1010143	Not Available	511	Open in IMG/M
JGI20235J16296_1010347	Not Available	508	Open in IMG/M
JGI20235J16296_1010409	Not Available	507	Open in IMG/M
JGI20235J16296_1010454	Not Available	506	Open in IMG/M
JGI20235J16296_1010597	Not Available	504	Open in IMG/M
JGI20235J16296_1010666	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	503	Open in IMG/M
JGI20235J16296_1010667	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	503	Open in IMG/M
JGI20235J16296_1010682	Not Available	502	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI20235J16296_1000241	JGI20235J16296_10002412	F012710	MRSKTYDITFAGQAGTTLHAEFDDCAVTVGPATTTLRAELPDQAALSGLVLRITGLGLEVVDLHVVALAPEQ*
JGI20235J16296_1000311	JGI20235J16296_10003112	F105604	MATPAPAAAEATGLWQGGFSGPGLPALGGAVVIAAQLPDDGAGVLVSYAGGIFTRQFWTTGPPVPQIIEILKPDEVAAVRDQVVEQLHTPGCGLDEIPLREFVEAVRLHFQQDASQRFAQAVFGSITPSSPLGLQGQVTWCDDVIGTVLGNPDGISAQSHLANVAAGNPAWLRSADLQSLVI
JGI20235J16296_1000438	JGI20235J16296_10004383	F042998	FTTLDGVRQWLGGTSPSLLPGVGSYGALYGAMFLVLLAVSVGGLFARYRKAGSL*
JGI20235J16296_1000547	JGI20235J16296_10005472	F026357	MKPGSKLELVIMLPPDLGLGPGGWTLCEASVVRVEEASEDKGLGIAATLDRIALMPEIG*
JGI20235J16296_1000565	JGI20235J16296_10005652	F001420	HESAALQGHPVLAEGYRAFSAALGTDAVQVQPDSKSLAAGLRTAARPWGGNYCSCQLGADGPGWVMPALGPSQDEVNRRLARADGLQAEPDPRLGGAINLIRPSLANTGRLHTAQQATADHRASFETFLSQRGLNAQSLAASPAAGTPRAL*
JGI20235J16296_1000733	JGI20235J16296_10007333	F025106	SVEWTPDGHGLTYLHTVGSARHLYLQPLTGGPPIQLTHFDTEPSLIASYGWSRDGKKFAITRARYNDTDVVMFSGFH*
JGI20235J16296_1001121	JGI20235J16296_10011213	F008215	MVMPLAGRVVAAVIGGLLVLTAASSVVGTLIVTRSVGSRLTWWVDRTVDRTYQL
JGI20235J16296_1001149	JGI20235J16296_10011491	F087491	MSTSSIAQVTTGGRQRTTRRSDRRAIALAIVLGAQL
JGI20235J16296_1001180	JGI20235J16296_10011802	F041946	KLLTAEPGADVLAVATSEEDRRLLASILMDEQEELTAETVEGAVRALRRIYLRRRLEEVQMALQRPGVAMAERQALLQEKVRLKLARRDPSGAEADGKAS*
JGI20235J16296_1001428	JGI20235J16296_10014282	F019956	MGAAVLADAGVEALGELFPGWRIWADLSTGWHACRRGGFIQDYHQGAPAFYVHAASVGELAVQLRWQEAAASTRAVRLLPAITA*
JGI20235J16296_1001517	JGI20235J16296_10015171	F009897	GMVYVLRPPGEDPKAILRAARLVLPEDLYQELARQLGLPASWPIVLADYDRLVVTHSACDGMVYVLRPPGEDPKAILRAARLVLPEGSYEELADQLGIPAGWAAG*
JGI20235J16296_1001576	JGI20235J16296_10015762	F009897	SCQEPAGGPLPADQARIVMADYDRVVVTCSKPDDTVLVLRPPGEDPKAILRVARLVLSEAHYAELAGRLGMPASWPIIMADYDRLVVTCSKRDDTVLVLRPPGEDPKAVLRAARLVLAEGPYGELADQLGEPAGWPME*
JGI20235J16296_1001667	JGI20235J16296_10016671	F000579	MVPDNTGSVSVIDFRRQRVVLQWHVLGGTWTACDVPPSLVHGIALIRPSQPNICIYGHGGRLRLQVGPEQFSLAENSPRIRCSRGVVSFGLRRRFLVSGTDGVLFTHAYWTGQGEDFFRWLAARAQDPEWRVTMGRRWSEGVPATTLRAA*
JGI20235J16296_1002246	JGI20235J16296_10022461	F005595	MPEKDPASERPNPASSRLDHEESQLWRWALGLLVLFAAALAALSWQQLEELHLPYRLWAIPAGFVALAVLFAAYAFGRKREVSELKTILKGFQDRGGVTPSEEQLDQLGQLIARSQRNFKELIDSLDEVALAISLDGTLRTVNRRASEILGVPYSSLVGHKLEEFLDAPMRAEASGGLAHFLEKRNWAGVVEINLDRKS
JGI20235J16296_1002336	JGI20235J16296_10023362	F008279	KATAGTAPRPAGLQARRIERSVTAATVIELVAAFVLPVIVIAAGHSDWVLPSIVITIGPLLLWLDHLVHIRRYRVIGWALTAGPVVLVATMSGSSLAVTTGLAAGVILLGTAAAGFHDLAVIRAARPQRPLPAGTKR*
JGI20235J16296_1002357	JGI20235J16296_10023571	F089375	MNYIVNNLWLGSQQDADQLIRKNPEKISAILNVRGPDAYQPPGRDQSAEHPGKAYKWIPAPDTGIISVCHM
JGI20235J16296_1002412	JGI20235J16296_10024121	F034637	NIQQNLPSEIDRKAAAKLPEARRIAEELIVQGRHSPI*
JGI20235J16296_1002629	JGI20235J16296_10026291	F061934	GAGSLYITARLARRVAALGRRWSVGRPVRRRLAAAAGLAVLTGLAAFWTMQGQFRGW*
JGI20235J16296_1002710	JGI20235J16296_10027101	F017014	LFVVGICNQHVAILRLLQVAERSVARLLFAFRVLPLAASVIVTFVFVVPSFQLLEPRSIDEGMGAMPLALGICALLLIACGCYRVMVAQTTTSRVVARWLEGARALNAGADAPPETVAFCSRRETPPLTL
JGI20235J16296_1003019	JGI20235J16296_10030191	F007658	MGYQALLFCSDEKLAAIVTQIFSELEFAIEAVHEPFAA
JGI20235J16296_1003191	JGI20235J16296_10031911	F049817	VAESTGAAGLQREREERYRKDRESWRARLRQYQGARQLPTSARDGWWSLDDGDEYDEMCRWPVISDDFVRGPPPAEARESA*
JGI20235J16296_1003207	JGI20235J16296_10032072	F057540	VISLAATGLSDTALRDVGVLGLAVCLVGSKNQRLVLRS*
JGI20235J16296_1003207	JGI20235J16296_10032073	F057540	AAIASVLMLEIVISLAATGLSDTALRDVGVLGLAVCLVGSKNQHLVLRS*
JGI20235J16296_1003215	JGI20235J16296_10032151	F035998	VGISDGDLVRLARDGDPVAFRLLVERHQPMTRARA
JGI20235J16296_1003423	JGI20235J16296_10034232	F024745	MAALGGAETLRFTTHQLVLTHEFAAGAPWVTSVPRNDHLVAKYAGIYAAEVLVAYELKKPHSWLPGDKFIRKLWWAYPAAMVPIHIKNGVRSIRTQAPSCPPEECQSQ*
JGI20235J16296_1003697	JGI20235J16296_10036972	F006628	MISRLIKAALLAALLAVVVQSLPDIKRYLELREM*
JGI20235J16296_1003697	JGI20235J16296_10036973	F038345	METIVGFVAGYLVGTREGRDGLERLRSSWHSIRTSPEVRKLAGDAITLAESVVRQRSGSASIGGAVGN
JGI20235J16296_1003848	JGI20235J16296_10038482	F000955	MDRTVRFQETLRRLAMIDEGFVEDQAGIGLAGTSVLDPKTT
JGI20235J16296_1003876	JGI20235J16296_10038761	F065974	PHDDIAEQTARVKLLLKPDAMYVDLPDLGLDPFFAAPERMVDLVNKYVPA*
JGI20235J16296_1004237	JGI20235J16296_10042372	F101947	MASSGPVYERLGAKILSLPDVIAQSVGFMGPVFSSAFVIPLV
JGI20235J16296_1004580	JGI20235J16296_10045802	F063891	MSARQCPNCMAFVPAGQIVAYSYDLVCPNCQHPLEIAPVSQYLSAFVGLVAGAIVWWLANAHYSKESEALSWVLPMLYSYLAFSVVAPLALIFTADLKLKPL
JGI20235J16296_1004800	JGI20235J16296_10048001	F075831	MTVALVLATEADAGLRIQLAALGVRKVDAAERAGPGLLTIAATARAVAERV
JGI20235J16296_1004854	JGI20235J16296_10048541	F052930	CAVMLFAIVLLLTIGCIAFILAREGQGGPRPNGLRGYIRARGWGLLLLPVAMAAAVMAGGAHGLIPAELGIAVLAVVFAPKLAAKLVPYGVLGLAVFGVMLAKTYRDGNTSKVQYLFVHAGPGAWGSRPVLAEAGVLFAVGLWLLLRLDAPGAGLFRALAARWLDRRRGGISAAQALLLVPVAGLAMQLLGPGNWFGIGAVDGLDAAVIDLAVATA
JGI20235J16296_1005084	JGI20235J16296_10050841	F056007	RVSIEIPGSILEIEQTDAGLAREWREATRWAFFGATKAGFVVSEFCRSIRGQQGPGAYLLQQSGEVGEPIPEVEKDQG*
JGI20235J16296_1005104	JGI20235J16296_10051041	F033574	LSGNSTTEKSAYGSYEDRMFLMGRALDAMESYPILGIGVQNFPKYSLIWHDVHMTYMQVGAEGGIPVLIIYLLFFRKAFQNLKILRKRTDLAPDIVLFVGALTSSLVGFVVGALFAPETYQYFPYFAVAFTATLLQTIKEQDKEGVNPVTPPPKRGRHFLEVYADHGGPVAVSPVR*
JGI20235J16296_1005648	JGI20235J16296_10056482	F013078	MQPGQEPRWRPLKRHDSHIAEQMVDRAAELARDSHARTRHAAVLIKDGSLLAWGTNGVPFPGEDHCYCKFGEVGHHDLCRTHAEQRAITLARGGDGWRMLPGSKLIYVRLEAD
JGI20235J16296_1005858	JGI20235J16296_10058582	F000407	YSLLARGLIMSRAFCIALMAAAAVTSAGCHSAYAVRPVPRIAADSVGKPIGRLQEAFGQPRKIDTTPTKEVYVWFLPEKPAGAPVGFHGCEMEVTVDARSEHVLGYSLSNVGWGKCPEVARKIRVAER*
JGI20235J16296_1006291	JGI20235J16296_10062911	F032465	VVLSHTGPVEPAADSVGGHIQPSSGRHRWARRPRFAGPSDRALHWLAGWYAIALRLGGAVLFTGVAVLAATRQISGWWLAAPLAALCFWSAFFAW
JGI20235J16296_1006317	JGI20235J16296_10063172	F042044	AENSVQAFVLYRELDYFEQLGALEKHGGVDFEMIKTLLGRRLIDRWELWQPTIDAMGGGDIYPMFDRLVTKMRAVV*
JGI20235J16296_1006950	JGI20235J16296_10069501	F101524	MMDGENKKSPMKRFMDLARRILGRKPSPPPADPYAYRMAPVRRGPKGRSGAAIAEIEDDSQRSFPPRRQ*
JGI20235J16296_1007038	JGI20235J16296_10070381	F050790	MGVRKTDASLPIDAGFLAQLQRHVAAREIERGIACLASRPDLIAPLDPSQGNSARLMAHLAIWTDIGFSGPPL
JGI20235J16296_1007070	JGI20235J16296_10070702	F000042	MKNIKFVVKVNRGGAHAPQYVLRVDRLPIQTTTNRKLALVMGRFTAEDAVKSMQNSHCNPELVSV
JGI20235J16296_1007312	JGI20235J16296_10073122	F002208	DHRPAGRTAIRSKPVRITLDLSPELYREFTHWVDSAAVTLDVPRVALADAMRAMIRVTTENPDGVLERLRSERGR*
JGI20235J16296_1007323	JGI20235J16296_10073231	F012840	MAKAGERAILGLLVFAFIVGLGLLAALVPVGHGFTPKGGGWFTPAVVGGAFTLHPLFIAVPAAACFVLGLLDWRHPWRVEHLDLLALAGFFPVAMLLSDDLSRVGLWLAASCLGWLFARLVGACHGAW
JGI20235J16296_1007358	JGI20235J16296_10073582	F041884	GLDFPFCTPRQQAAEAAYLLAHGYTLVFADDGYEVLHRPADWRTAQALAHPLPAARLHTNICY*
JGI20235J16296_1007523	JGI20235J16296_10075231	F004436	MAGFFPLSRSRAVHRRSRPMQLLTEAGVVKLEVPYGQDATDQHWGCPIRERWGLTSHQQLSLALEDKLAFTITATASYEEAAALAQKWGVAVTDSSLHSLTQRLGARAQTQRQEQLKTPPVETEPKRAPAKLGVLMLDGWQVRQRGPGWGRRKTKENRVEWHEWKTGVYYPQEK
JGI20235J16296_1007709	JGI20235J16296_10077091	F056014	ETGAGTFMSVEGLPGLTVQHMLMFMEKLRGMHEQDPLAFEVCLRHVASVIEDQRREEGRTDPRERPAP*
JGI20235J16296_1007716	JGI20235J16296_10077162	F004980	MFGIFVFAVVALLCIKLIPPFFANYELEDSIKTEAVQSTYSTRSEDDIRQSIIKTARSYDIPLTPKQVRVSRIGGFGAGTLNIEADYSVPVDFP
JGI20235J16296_1007993	JGI20235J16296_10079932	F070439	LAGPASAWKTTANAWIRHCERKPAGTITVVFHDWWSTAPLDTTFSCTSLRR*
JGI20235J16296_1008258	JGI20235J16296_10082581	F013552	IKASGNEGMQHFDGEIAKLVRSGLVDLETGLGFASNATVLGQELAR*
JGI20235J16296_1008401	JGI20235J16296_10084012	F063865	MGSVFSAIEKSGPAGLVLRAIIASLLGIFLLIGFIVLRRWYRARYFRRRNQRTVALRSQWDDIVSGKIPPLDWRFDPLDCDIVESILLDQIEMSLPDDLPPLLNCLRLSGL
JGI20235J16296_1008511	JGI20235J16296_10085111	F077624	MPKLPVFRLRSSEPPTLPDLQYRAIALALSNLQLGVD
JGI20235J16296_1008517	JGI20235J16296_10085171	F035880	MVMEFAFAAAVLCVIVVAYVRGNREPPSNGPLRTEIQARVCFETSLSRVRVLGTGGFGGTHGMWISLRGPKRLTVSTDAFMVSAAQALRDYVFSGRESSIALSQAPSRLVNRDWIVITGQNGGRQVQLAI
JGI20235J16296_1009021	JGI20235J16296_10090211	F008321	IEFGELRRVAQRTIDQRQIVINNLSVRRAVQELKVARNFDQVRSVMVAAFDSNDFDAFELQLKTLPGDQAASAEANLHFHWSKFPHMAAISMQPSWKLTLDLVTTSNRRRGTMIVSRIYSQRDLQLDVNLLTSEFPTTLADALDRVLTMPEVLVPLAQSDRPPLAASL*
JGI20235J16296_1009081	JGI20235J16296_10090811	F006800	MSRRHQIAATYAFKCALLFLGCAVFSWGLQAKLSLYKTPQTPSTITVAKLLTERRSAQTVALFEKALEPDMTWETLNLIPLLILAQVIFVLTFKFYELEMNLCTSRRCDFHDP
JGI20235J16296_1009124	JGI20235J16296_10091241	F080280	QKQNRKNNGSGQSEHNSPDQKQDRNYSREYNQPVLAALRTGVGNASPALKVEMNATTNRRFV*
JGI20235J16296_1009539	JGI20235J16296_10095391	F003697	VTSSEASVPAGTAGTAKVGSTPSTRLFVRQTSGLVRDLGIPAATGISLASVAVVNTFINFNAGLTDFTKADMYLPLVVAAGIWLVAMFAYR
JGI20235J16296_1010040	JGI20235J16296_10100402	F084577	WRRPPGEPASIAALRKIWPLLLSVYLFNAFFVDMAYQFVIGLMFTVAGMLCASTLPLSEESAA*
JGI20235J16296_1010143	JGI20235J16296_10101431	F037850	MRTQREGAQLQPRGMRSAGPGDDQARFLADLRALREAAAVGYDELAARAHYPSDILKEAE
JGI20235J16296_1010347	JGI20235J16296_10103472	F076422	MPQPVLRRAAHRVAQFAILAAAILVVLLVFSRQAHAATPPATA
JGI20235J16296_1010409	JGI20235J16296_10104092	F062923	MPDATGPVLLVVGGDAKRLQWLNHHVTSHWPSAQVTTAPGTDAASLTRFVQERAPDAVIM
JGI20235J16296_1010454	JGI20235J16296_10104541	F017737	MNARTVPAGQAKAVAAPPRFDAKFIEDHKLIERYLENKLPLRGAVDLENWCRAHPEYLDKLKLSERAQASLKLLEASGHSVDLGEPPQPWWKSHYVLIGLAAVTFLSLVAAWTLVGKLSLLRSELED
JGI20235J16296_1010597	JGI20235J16296_10105972	F027336	DRRKALTHFALQMSPHDAALLRAALDQASREPEAGEAR*
JGI20235J16296_1010666	JGI20235J16296_10106661	F055947	NCGTGAQLLVSESGEAERDGLRAFEIPDRDPIAASSATEFDGQIVALWPESTGNGAVAVIKRKDTGWYEAYRVSVSCSN*
JGI20235J16296_1010667	JGI20235J16296_10106672	F030165	MDDNLLKLFIAITTFAVLLQAGILLGLFLAVRKSTARMEALAAEVTSKTLPTIEAFQSTLTELRPKIDVISTNAAESSNLIRNQLARIDATLTDALDR
JGI20235J16296_1010682	JGI20235J16296_10106822	F092503	VFSNFLDGVILGVLPLAAAGFLGWILVKSIAAATGPQIWSLVGIMAVGVILMLVARFVLRPQFFHLRRETEGRIR*

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300001632: Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF001

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences