Sample 3300001636

Basic Information
IMG/M Taxon OID	3300001636 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0085736 \| Gp0057253 \| Ga0003841
Sample Name	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF002
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF002

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	8640548
Sequencing Scaffolds	23
Novel Protein Genes	28
Associated Families	23

Dataset Contents

Total Genome Size

8640548

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	9
All Organisms → cellular organisms → Bacteria	4
All Organisms → cellular organisms → Bacteria → Acidobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	6
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → cellular organisms → Bacteria

All Organisms → cellular organisms → Bacteria → Acidobacteria

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium

All Organisms → cellular organisms → Bacteria → Proteobacteria

All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales

Ecosystem Assignment (GOLD)
Name	Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Ecosystem Assignment (GOLD)

Name

Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Type

Environmental

Taxonomy

Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	forest biome → land → forest soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

forest biome → land → forest soil

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Harvard Forest LTER, Petersham, MA, USA
Coordinates	Lat. (^o)	42.532967	Long. (^o)	-72.209488	Alt. (m)	N/A	Depth (m)	0 to .1
Location on Map

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Location Information

Location

Harvard Forest LTER, Petersham, MA, USA

Coordinates

Lat. (^o)

42.532967

Long. (^o)

-72.209488

Alt. (m)

N/A

Depth (m)

0 to .1

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000083	Metagenome / Metatranscriptome	2471	Y
F000620	Metagenome / Metatranscriptome	981	Y
F004146	Metagenome / Metatranscriptome	451	Y
F005494	Metagenome / Metatranscriptome	399	Y
F007656	Metagenome / Metatranscriptome	347	Y
F012390	Metagenome / Metatranscriptome	281	Y
F012806	Metagenome / Metatranscriptome	277	Y
F014301	Metagenome / Metatranscriptome	264	N
F014678	Metagenome / Metatranscriptome	261	Y
F016605	Metagenome / Metatranscriptome	246	Y
F020247	Metagenome / Metatranscriptome	225	Y
F022644	Metagenome / Metatranscriptome	213	Y
F023944	Metagenome / Metatranscriptome	208	N
F030235	Metagenome / Metatranscriptome	186	Y
F035094	Metagenome / Metatranscriptome	173	Y
F037348	Metagenome / Metatranscriptome	168	Y
F041945	Metagenome / Metatranscriptome	159	Y
F043634	Metagenome / Metatranscriptome	156	Y
F046526	Metagenome / Metatranscriptome	151	N
F051336	Metagenome / Metatranscriptome	144	Y
F060395	Metagenome / Metatranscriptome	133	Y
F065985	Metagenome / Metatranscriptome	127	N
F067238	Metagenome / Metatranscriptome	126	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
JGI20236J16297_100144	Not Available	1869	Open in IMG/M
JGI20236J16297_100712	All Organisms → cellular organisms → Bacteria	1007	Open in IMG/M
JGI20236J16297_100781	All Organisms → cellular organisms → Bacteria → Acidobacteria	959	Open in IMG/M
JGI20236J16297_100789	All Organisms → cellular organisms → Bacteria	955	Open in IMG/M
JGI20236J16297_101229	Not Available	727	Open in IMG/M
JGI20236J16297_101301	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	698	Open in IMG/M
JGI20236J16297_101398	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	673	Open in IMG/M
JGI20236J16297_101475	All Organisms → cellular organisms → Bacteria → Proteobacteria	648	Open in IMG/M
JGI20236J16297_101543	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	631	Open in IMG/M
JGI20236J16297_101560	Not Available	628	Open in IMG/M
JGI20236J16297_101700	Not Available	603	Open in IMG/M
JGI20236J16297_101715	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	600	Open in IMG/M
JGI20236J16297_101721	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	599	Open in IMG/M
JGI20236J16297_101914	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	567	Open in IMG/M
JGI20236J16297_101923	All Organisms → cellular organisms → Bacteria	566	Open in IMG/M
JGI20236J16297_102047	Not Available	548	Open in IMG/M
JGI20236J16297_102191	Not Available	528	Open in IMG/M
JGI20236J16297_102242	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	523	Open in IMG/M
JGI20236J16297_102267	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	519	Open in IMG/M
JGI20236J16297_102297	Not Available	516	Open in IMG/M
JGI20236J16297_102315	Not Available	514	Open in IMG/M
JGI20236J16297_102321	Not Available	513	Open in IMG/M
JGI20236J16297_102427	All Organisms → cellular organisms → Bacteria	504	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI20236J16297_100144	JGI20236J16297_1001441	F065985	MEPPSVQSPFAHSRCCRELGRHELPPERTLLLRLSSYGLMRQSRRLSSPSAIASCEESTQVATSPCCQRNLLDVILRIFPWLPGPLPRRSHRVHAPVDFPDVIGLPPRKDGLASRFIPRTRLFVGEFSRLQTFRYVQAPKFVCLPDRSHRYGNATGRPRLLHPGRTCFVASARTGYASRPKQAIDGTRTCTLLDPQHCRPLPFPPHSPPTIFCLCSNDSSVLHRRVTPRGRTCGPCGYCLRPPSCCLV
JGI20236J16297_100490	JGI20236J16297_1004903	F000083	LARLDAQREKLTGQLGELEAAERVLARYSKGTGPRKAASAHTPSTSTKAPAAAPSRERRRTRVAKPAGGKRSSLTLNDQVLALATGKTQQEITAACKGARPNHVGAALARHKRAGRIEEREGKLYATQSTETTARRTDP*
JGI20236J16297_100653	JGI20236J16297_1006532	F000083	MSTLDEITQEKQRVSEALARIDAQRQKLAGQLGELEATERVLARYSTGTKRTVSAKSPPSPTKAVAPAQRQRGRRPATTAKPSDGRRTSATLSDQVLALATGRTQHEIASACKGARPNHVGAAISRHKRAGRIEERDGKLYASQATEAAQHAAV*
JGI20236J16297_100712	JGI20236J16297_1007122	F035094	LTENELSDFSRLWHDGCVKAITEAQDVDRNHSAQV*
JGI20236J16297_100781	JGI20236J16297_1007811	F037348	MGHESRIELWSPNLTTFCFAGFGTDRLRREEAMKTAGSENPNRGGTLSRNRAHGAVGQNKSRSIKWAEKQEKVRPKEMCFFLTSPFIEL
JGI20236J16297_100789	JGI20236J16297_1007892	F051336	DDSLIDAYHQAWEDHRDARAEGSDNLDKAGAEGLATETAMRRRFADYQSRYKARYP*
JGI20236J16297_101229	JGI20236J16297_1012291	F022644	QSSTLLIGGLRERSSRQGRSLAGGKSPHRQLPVFGRLAYPMRGEATNRVLLGRKSPGCPAGVFAAVGTIWGASKLGGRNITKYLQPRNSPLARSRFKRDRCGKPTHFPVGKADDTVEETGASTRCTAGVGDPASKERLLEITSGSCRGQQGLVTTCKDSPNEAKSRRRREPTGAAHEPVRAKTEE*
JGI20236J16297_101301	JGI20236J16297_1013012	F020247	MTFVGSVHNPKIMLGMLVKVLCGDAIATRRRLPREGNVTFEDLMRGTSDFDVRTVTLEILTSMRYLLPIMVGIVAVIATMRSSSLSWSHDTCWIDGEVGSLSN
JGI20236J16297_101398	JGI20236J16297_1013982	F004146	AGTLPDKPPVVTSKANPHYQKHFDRLFGLARAGNWNAVRDYEVKGSNSYSKMVARYRQDLLELHAASGAAQ*
JGI20236J16297_101475	JGI20236J16297_1014751	F067238	SKAMVVSVAETAGMIPSGKVERGERKQTADDVSKSD*
JGI20236J16297_101543	JGI20236J16297_1015432	F005494	DAERDANIAEQPRRAKATTPQNSSRSRYAIDPETITAGRLPQRAPVVTSAANPHYQKHFDRLFDLAKAGDWDGVRNYEVKGSNSYSKMVARYRQDLLAVHAASEAAP*
JGI20236J16297_101560	JGI20236J16297_1015601	F023944	CRRDTVDPHQKTMMVQSFVAAFAKAARVSDVPEEAIMSDTREPSYMFLAAEWNRSSVSERAYLLAMLFGREFEVEANDLSLQIASLAMTMVEPDGSAALIARVDLGAAD*
JGI20236J16297_101560	JGI20236J16297_1015602	F012806	MTDAPPIITNEDAAIDSAFFGSHAGRTCYARAHHSGWVLVVRQIVAQREPPVMLRVWGRLERVPDNDANCLALWERCAY
JGI20236J16297_101700	JGI20236J16297_1017001	F007656	MSLYRCRYLDRTFNVFEIXGXACXNDAEAIVMARXMSANTGAXGFELLQDERCVHMETMPSATARDHRSRA*
JGI20236J16297_101715	JGI20236J16297_1017152	F012390	MTDPSRLRKRPLEAEAATSARAAGEIDIAGCATIAYSSEDPAHPVEHMLDGRNGPGATRWVS
JGI20236J16297_101721	JGI20236J16297_1017211	F060395	HPALALGNNAHAPQRIGMTDRSHRQPASDEAPHAIPEDAAVLAAPRQRAMPKPADSEPKNCQRRLVHGHSVVARVSTYNRPQPLALFGDGFVXSSPKLGFHLIQLRLQPFPYRLPQHREPSIAPLLYADMRKSQKVERLRLPFSTPLPLVDRMRTELQKSRFLGMQLQVELLHTFREFRPELIGIRLAVKSNHDVVCET
JGI20236J16297_101906	JGI20236J16297_1019061	F000083	MSTLDEITKEKQRISEALARVDMQRDKLASQLGELEATERVLARYSKGTEIKKTTSARTPTTATKAAAPARRHGRPPTTTAKAAGRKRSSSNLGDQILALATGKTQQEIAAACKGARPNHVGAALARHKRAGLIEERDGKLYAIPSTRTDQPAAL*
JGI20236J16297_101914	JGI20236J16297_1019141	F004146	AMPAKQPRRAKPTPPQKSSRSRYTIDPEAIAAGQLPDMAPVVTSNANPHYQKHFDRLFALAKAGDWDGVGNYEVKGSNSYSKMVARYRQDLLAVHAASEPAQ*
JGI20236J16297_101923	JGI20236J16297_1019231	F030235	TKREAIVTQLVNRSATADWRAIKILLDLVRDIEGQTEPASPETSAFSEADEKVIEQLRARFSKAEK*
JGI20236J16297_102047	JGI20236J16297_1020472	F041945	EQMSPEQMVEKIRQQQKEIEYLKRQREILKKAMSILGEEPHSGMR*
JGI20236J16297_102191	JGI20236J16297_1021912	F014301	LLELPAPPATPGVALDPEARVKAIEILASMIAQTLATSTQPQNEVADE*
JGI20236J16297_102242	JGI20236J16297_1022421	F014678	MIGSFRIGRQGAGSQIGFDHVGDDGTRLGKIESCDSRIHLVETLSATQ
JGI20236J16297_102267	JGI20236J16297_1022671	F046526	PASRDRAVYPLPRSLTPLLPLWQAALQDAVTRQGIFRPEASRRLSLVVKVLEFSLSGNILSVFARYQLFDVPAGNPVFSADIMSNAGLSGLATGVTSLDDPTAATQNRTQVIRAIQDNITQFLDRLEAFARQPRGAAPPRP*
JGI20236J16297_102297	JGI20236J16297_1022971	F012806	MTDEPPIIIDEDAAIDSAFFGSHAGRSCYARAHRSGWVLVVRQAVAQREPPMMLRVWSRVERVPDDDASCLALWE
JGI20236J16297_102315	JGI20236J16297_1023151	F022644	EAADKAENLAGCKSPYRQXPVFGRLAYPERAEVTKHDVPGRRSPGCPAAVFAAVGTIWGASKLGGRNITKYLQPRNATPREVVIRGQTREADPTLDMGKADGAVEETGASTRSTAGVWGPASKKRFSELTSGSCRGQQGLVTTCKDSPNEARNRRRREPNGSGA*
JGI20236J16297_102321	JGI20236J16297_1023211	F043634	NDRERSNRTRQNAEDLFKPKPQTTRADVPNDDSSAEYQPRRQPRIFAIPPVVPMSTTKVEPAAEPKQIRRKAIDKRGTREIPLSQFGRVRTLTSYGMTPAQVAELYGVAVGEIDRIIRRPR*
JGI20236J16297_102425	JGI20236J16297_1024252	F000620	MRTTPRILDQISAEKTKVGERLARLDADRATVTAQLTDLETAERVLTR
JGI20236J16297_102427	JGI20236J16297_1024272	F016605	MVEKSELLRVPVFADLPDDQLDWFISQSEELHLKAGEGYAR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300001636: Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF002

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences