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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300001712 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0067852 | Gp0056790 | Ga0006058 |
| Sample Name | Marine viral communities from the Pacific Ocean - LP-31 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 28037777 |
| Sequencing Scaffolds | 4 |
| Novel Protein Genes | 4 |
| Associated Families | 4 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 3 |
| All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine biome → marine water body → sea water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Pacific Ocean | |||||||
| Coordinates | Lat. (o) | 48.969 | Long. (o) | -130.6661 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001136 | Metagenome / Metatranscriptome | 767 | Y |
| F006323 | Metagenome | 376 | Y |
| F015491 | Metagenome | 254 | Y |
| F020998 | Metagenome / Metatranscriptome | 221 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| JGI24511J20085_102651 | Not Available | 610 | Open in IMG/M |
| JGI24511J20085_102996 | Not Available | 580 | Open in IMG/M |
| JGI24511J20085_104301 | All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote | 505 | Open in IMG/M |
| JGI24511J20085_104352 | Not Available | 503 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| JGI24511J20085_102651 | JGI24511J20085_1026512 | F020998 | MQTSKRPGYIWRVDDHIDLMLALFDILDQAAVDYDRSEDVVDDFQAYLKDWAKRRDEKPER* |
| JGI24511J20085_102996 | JGI24511J20085_1029962 | F001136 | MVVDDSISQALNRIADGIEENNIVLNRIANHYDGVVPVMTRNANRAEAQGKAIDEELDNSFGEKVRSIFKPQTN* |
| JGI24511J20085_104301 | JGI24511J20085_1043011 | F015491 | MKKTKRQRSAKVQALPQVTPRKWSKKSVRIFDKQFDRFLYDELYVPVRKNWGEEIVKYERDMFGDSK* |
| JGI24511J20085_104352 | JGI24511J20085_1043521 | F006323 | SSDLYQLHIKRKVEMSKNMHKLGNLTRDDINFPKHLTPEIVHTAXFIHNAPSKEDMTKRVEHSAKLIGGEAMTYAMALLVLPHLIDNTTHSQDYKDFLASKKKTIN* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |