NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300001869

3300001869: Arctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations 11-33A



Overview

Basic Information
IMG/M Taxon OID3300001869 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0084162 | Gp0055560 | Ga0016730
Sample NameArctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations 11-33A
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size214654460
Sequencing Scaffolds12
Novel Protein Genes14
Associated Families12

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes1
Not Available5
All Organisms → cellular organisms → Bacteria2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales → Prolixibacteraceae1
All Organisms → cellular organisms → Archaea → Euryarchaeota1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameArctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)polar biome → polar → peat soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationBarrow, Alaska, USA
CoordinatesLat. (o)71.290884Long. (o)-156.788063Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004441Metagenome / Metatranscriptome438Y
F014092Metagenome / Metatranscriptome266Y
F029738Metagenome187Y
F053674Metagenome141Y
F079367Metagenome116Y
F084901Metagenome112N
F087142Metagenome110N
F088782Metagenome109N
F090156Metagenome108Y
F096256Metagenome105N
F104110Metagenome / Metatranscriptome101N
F106196Metagenome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
JGI24147J20444_1000363All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales31116Open in IMG/M
JGI24147J20444_1003636All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales6202Open in IMG/M
JGI24147J20444_1006209All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes4351Open in IMG/M
JGI24147J20444_1008610Not Available3512Open in IMG/M
JGI24147J20444_1011464Not Available2873Open in IMG/M
JGI24147J20444_1014048All Organisms → cellular organisms → Bacteria2493Open in IMG/M
JGI24147J20444_1029782All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales → Prolixibacteraceae1341Open in IMG/M
JGI24147J20444_1029923Not Available1335Open in IMG/M
JGI24147J20444_1044164All Organisms → cellular organisms → Archaea → Euryarchaeota909Open in IMG/M
JGI24147J20444_1044327Not Available904Open in IMG/M
JGI24147J20444_1075260Not Available535Open in IMG/M
JGI24147J20444_1077582All Organisms → cellular organisms → Bacteria520Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
JGI24147J20444_1000363JGI24147J20444_10003632F084901METQRNTYYTTDRREQYKRRAFEADLLKLVIAVVAELVIFFIWFDGPARERYEILVHIALPICILLPILNYRYLIVVPFIAFLPDVARAIGIDISHSLVILPLVFLAAFLPFVRRPKTALIAGYAAFAIYASHLIVDTRKYAIIENVGGYLWNNMVLYVLLLTVIGFLLVQLLRFSDTNKMAEEL*
JGI24147J20444_1003636JGI24147J20444_10036364F090156MTHDMRTANQTMSDNEQPLELSPELRREVVALFAPMDRSLASSVTAVIGARRSRRRLLQGLWLGLSPIMAIAIVAVLYVGGAVLQPASLPATSSRALLAPNPRFGIADAAPKGLAGSENVPTVATACQVLSFRVMLKGDIARRQLLATWLRARHADVALELDTAAPGQDIPLTLEPDEVRGFEALMVLHGFTGQQSSGLSTVAGCSPASWASSLGTSSLFICLIP*
JGI24147J20444_1006209JGI24147J20444_10062092F014092MKKLLIVIALFIAVMAVNAQVINTTDSTRTVVKVADLQKAITDNIAKDYVGYTIKEATSVTANNIVTFEVVVVKGTATEVLVYDKEGIFVKKLPPVPKK*
JGI24147J20444_1008610JGI24147J20444_10086101F084901LKLVIAVVAELVIFFIWFDGPARERYEILVHIALPICILLPILNYRYLIVVPFIAFLPDVARVIGIDISHSLVILPLVFLAAFLPFIRRPKTALIAGYAAFAIYASHLIIDTRKYAIIENVGGYLWNNMVLYALLLTLIGFLLVQLLRFSVTNKMAEEL*
JGI24147J20444_1011464JGI24147J20444_10114643F079367MATNLDKAGAKIKKMLTRGDVADDKFQHKDDIAWWMGRYETLITTEADAVVRKAMAKLNEAVALREEGINLVEQLDRDIIEAESEITRLGGAAFIEKSEPMIEELKVYYDNLYESLKRPQSEEVEK*
JGI24147J20444_1014048JGI24147J20444_10140485F029738MITAKFSSNCSKCKTKLLKGTTIYYWPSSREVFCTKCGEGPYRQFLSSAADEDVYNGCGNPYAY*
JGI24147J20444_1029782JGI24147J20444_10297823F087142MTEFQFLENLEFYQRRFEKHHYKFIRDLNLYIRINRVHDSVFFNTVLNYSLNITLTASWIKLLKDFNSDKYNNILRFSTDFNNLNGVPDAKINPTGSGNHE*
JGI24147J20444_1029923JGI24147J20444_10299233F053674MKKVLIVLVLIMAVMVVNAQVTNTTDSTRTVVKVADLQKAITDNIAKD
JGI24147J20444_1044164JGI24147J20444_10441643F106196MTQDDKNETIKCTVSCPECGAEMICTHEDSKHEEK
JGI24147J20444_1044327JGI24147J20444_10443271F096256VRMGSRKLESMLVTAMIATVLISGCLSSLPLGSTPTATPQDLSVSYDASFVLSGWHAISKFSQIKPKTYVGAYADAKGQSWNFTVELFSAENTSYNRYFELMKTRSDEGYIKTTESKIALGTGQTVFGRIDEKWYGYKASDSANPTLFALFFGYDKTADSWVVATAASGATIITQTTSALS*
JGI24147J20444_1048350JGI24147J20444_10483502F104110SSSGEVYYLVEKGEDPNIRYYFTQEDVLTSNERVVARSVGEFTDDTAKRSHFLCALYGVEVRDATNKRVGVLDNFVASPEGALVVIEDAKGNALVGRYRDLDLTRLSKFAILKQLPAQDSFDEYLKDINRDALLTKGISCDLSSVAKDEGLLSRIRKKLAQSEEDRIITDQALID*
JGI24147J20444_1050887JGI24147J20444_10508871F104110SSSGEVYYLVEKGEDPNIRYYFTQEDVLTSNDRVVTRSVGEFTDDTAKRSHFLCALYGVEVRDTTNKRVGVLDNFVAGPEGALVVIEDAKGNALVGRYRDLDLTRLSKFATLKQLPAQDSFDQYLKGMNKDALLTKGISCDLSSVAKDEGLLSRIRKKLAQSEEDRIITDQALID*
JGI24147J20444_1075260JGI24147J20444_10752601F088782RFQAHAGNLCCLYRDHIMSWLDLPPLELIGAAPDPVVTPEENGLVKGMLGLVAGGLVGFWTTSTVEIWHPDNPAALAAILGVGEVERMDTGTGFAECGLFDREKKVLRVRNRNPQSGPPRVFPGRTTGVPNPDLDPRAVWQLTHMVDVALRRDERWALAPGGHGSSDYSLGLETGPWQ
JGI24147J20444_1077582JGI24147J20444_10775821F004441SAKVKGTAMQMNDVFFLPGDDPSGWKVTSSVKKNDSNKLGSFVTVNLHGTKSGQLDFDYQISVSQNYNDIIVSLGRTNTTGKSVDLQDMDYFVSNDTRLGSTTDRWISLGTQSQNRELYDLWPVINLITPRMYIVNHVIRDSDTGNSLLMGHVTANKGASRFEISSGWQGKTP
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