NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300002065

3300002065: Macroalgal surface ecosystem from Botany Bay, Galicia, Spain - SA3-P2



Overview

Basic Information
IMG/M Taxon OID3300002065 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0085351 | Gp0061083 | Ga0011311
Sample NameMacroalgal surface ecosystem from Botany Bay, Galicia, Spain - SA3-P2
Sequencing StatusPermanent Draft
Sequencing CenterJ. Craig Venter Institute (JCVI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size286829789
Sequencing Scaffolds1
Novel Protein Genes1
Associated Families1

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMacroalgal Surface Microbial Communities
TypeHost-Associated
TaxonomyHost-Associated → Algae → Green Algae → Ectosymbionts → Unclassified → Macroalgal Surface → Macroalgal Surface Microbial Communities

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Surface (saline)

Location Information
LocationVigo, Galicia, Spain
CoordinatesLat. (o)42.52Long. (o)-8.82Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F059010Metagenome / Metatranscriptome134N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
SA3_10050191Not Available584Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
SA3_10050191SA3_100501912F059010MTRQELLNQVAEKLERCEHTPIVTEKEELQIWAMLLNKVYEETFKTKDVK*

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