Sample 3300002169

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300002169

3300002169: floor swab of Spacecraft Assembly Facility - replicate A (Combined floor swab M2426|M2425|M2424|M2423|M2428|M2427, ASSEMBLY_DATE=20140108)

Overview

Basic Information
IMG/M Taxon OID	3300002169 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0095512 \| Gp0056968 \| Ga0024822
Sample Name	floor swab of Spacecraft Assembly Facility - replicate A (Combined floor swab M2426\|M2425\|M2424\|M2423\|M2428\|M2427, ASSEMBLY_DATE=20140108)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	27685365
Sequencing Scaffolds	2
Novel Protein Genes	2
Associated Families	2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Clean Room Microbial Communities From Nasa Spacecraft Assembly Facility At Jet Propulsion Laboratory, Pasadena, California, Usa
Type	Engineered
Taxonomy	Engineered → Unclassified → Unclassified → Unclassified → Unclassified → Clean Room → Clean Room Microbial Communities From Nasa Spacecraft Assembly Facility At Jet Propulsion Laboratory, Pasadena, California, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Surface (non-saline)

Location Information
Location	NASA Jet Propulsion Laboratory, Pasadena, California, USA
Coordinates	Lat. (^o)	34.1991	Long. (^o)	-118.1715	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F033665	Metagenome / Metatranscriptome	176	Y
F071964	Metagenome	121	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
JGIcombinedJ26738_111389	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	661	Open in IMG/M
JGIcombinedJ26738_114637	Not Available	549	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGIcombinedJ26738_111389	JGIcombinedJ26738_1113891	F071964	IALERSLSTSPSDVLGDVRALLAAPASSLEELLADRIAGEAVRIVEDLIREAFVVTEFDPDEVYGFMNSEEAAEFLGLPYSSFREIAPSLPRHAITPARFGYLRRELLAWGKDR*
JGIcombinedJ26738_114637	JGIcombinedJ26738_1146372	F033665	MLICGSIGCALAIKIGGEAKTHEISKTQKWSGQILLGLEDIKIINIFNGVPKSKRRKNKILMGINIKLG*

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