Sample 3300002305

3300002305: Freshwater microbial communities from Lake Mendota, WI - 03OCT2011 deep hole epilimnion

Overview

Basic Information
IMG/M Taxon OID	3300002305 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0063444 \| Gp0055647 \| Ga0003624
Sample Name	Freshwater microbial communities from Lake Mendota, WI - 03OCT2011 deep hole epilimnion
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	Y
Use Policy	Open

Dataset Contents
Total Genome Size	46463073
Sequencing Scaffolds	54
Novel Protein Genes	63
Associated Families	57

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	31
All Organisms → cellular organisms → Bacteria	4
All Organisms → cellular organisms → Eukaryota	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Cryptomonadaceae → Cryptomonas → Cryptomonas curvata	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Choreotrichia → Tintinnida → Xystonellidae → Favella → Favella ehrenbergii	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	3
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales → Sphingobacteriaceae → Pedobacter → unclassified Pedobacter → Pedobacter sp. BS3	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa
Type	Environmental
Taxonomy	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	freshwater lake biome → epilimnion → lake water
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Location Information
Location	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000403	Metagenome / Metatranscriptome	1177	Y
F000716	Metagenome / Metatranscriptome	923	Y
F001530	Metagenome / Metatranscriptome	676	Y
F004816	Metagenome / Metatranscriptome	422	Y
F004995	Metagenome / Metatranscriptome	415	Y
F009252	Metagenome	320	Y
F010246	Metagenome	306	Y
F010462	Metagenome / Metatranscriptome	303	Y
F010898	Metagenome	297	Y
F016643	Metagenome	245	Y
F017607	Metagenome / Metatranscriptome	239	Y
F017631	Metagenome / Metatranscriptome	239	Y
F017959	Metagenome / Metatranscriptome	237	Y
F018935	Metagenome / Metatranscriptome	232	Y
F019022	Metagenome / Metatranscriptome	232	Y
F019088	Metagenome	231	Y
F021250	Metagenome	219	N
F021939	Metagenome	216	Y
F023494	Metagenome / Metatranscriptome	210	Y
F023523	Metagenome / Metatranscriptome	209	N
F024729	Metagenome / Metatranscriptome	204	Y
F028489	Metagenome / Metatranscriptome	191	Y
F029658	Metagenome / Metatranscriptome	187	N
F030344	Metagenome / Metatranscriptome	185	Y
F031011	Metagenome / Metatranscriptome	183	Y
F032550	Metagenome / Metatranscriptome	179	N
F033698	Metagenome / Metatranscriptome	176	Y
F034341	Metagenome / Metatranscriptome	175	Y
F038208	Metagenome	166	Y
F038566	Metagenome / Metatranscriptome	165	Y
F041188	Metagenome / Metatranscriptome	160	N
F041609	Metagenome / Metatranscriptome	159	Y
F045792	Metagenome / Metatranscriptome	152	Y
F051731	Metagenome / Metatranscriptome	143	N
F054611	Metagenome / Metatranscriptome	139	N
F059676	Metagenome / Metatranscriptome	133	Y
F059906	Metagenome / Metatranscriptome	133	Y
F067410	Metagenome / Metatranscriptome	125	N
F069742	Metagenome / Metatranscriptome	123	Y
F071153	Metagenome / Metatranscriptome	122	Y
F073122	Metagenome	120	Y
F073190	Metagenome / Metatranscriptome	120	N
F074408	Metagenome	119	N
F078285	Metagenome / Metatranscriptome	116	N
F078425	Metagenome	116	Y
F080900	Metagenome / Metatranscriptome	114	Y
F080938	Metagenome / Metatranscriptome	114	N
F082156	Metagenome / Metatranscriptome	113	N
F085617	Metagenome	111	N
F086627	Metagenome / Metatranscriptome	110	Y
F086808	Metagenome / Metatranscriptome	110	N
F088244	Metagenome	109	N
F089425	Metagenome / Metatranscriptome	109	Y
F095529	Metagenome / Metatranscriptome	105	Y
F096054	Metagenome / Metatranscriptome	105	Y
F097335	Metagenome	104	Y
F102832	Metagenome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
B570J29619_1000001	Not Available	90879	Open in IMG/M
B570J29619_1000153	All Organisms → cellular organisms → Bacteria	7539	Open in IMG/M
B570J29619_1000444	All Organisms → cellular organisms → Bacteria	4272	Open in IMG/M
B570J29619_1000542	Not Available	3810	Open in IMG/M
B570J29619_1000553	All Organisms → cellular organisms → Eukaryota	3780	Open in IMG/M
B570J29619_1000705	All Organisms → Viruses → Predicted Viral	3294	Open in IMG/M
B570J29619_1000747	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Cryptomonadaceae → Cryptomonas → Cryptomonas curvata	3180	Open in IMG/M
B570J29619_1000877	All Organisms → cellular organisms → Bacteria	2924	Open in IMG/M
B570J29619_1001031	Not Available	2599	Open in IMG/M
B570J29619_1001075	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	2547	Open in IMG/M
B570J29619_1001201	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales	2407	Open in IMG/M
B570J29619_1001286	Not Available	2310	Open in IMG/M
B570J29619_1001514	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Cryptomonadaceae → Cryptomonas → Cryptomonas curvata	2095	Open in IMG/M
B570J29619_1001880	Not Available	1851	Open in IMG/M
B570J29619_1002588	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Choreotrichia → Tintinnida → Xystonellidae → Favella → Favella ehrenbergii	1533	Open in IMG/M
B570J29619_1002895	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Cryptomonadaceae → Cryptomonas → Cryptomonas curvata	1427	Open in IMG/M
B570J29619_1002963	Not Available	1408	Open in IMG/M
B570J29619_1003074	Not Available	1379	Open in IMG/M
B570J29619_1003425	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1302	Open in IMG/M
B570J29619_1004423	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	1131	Open in IMG/M
B570J29619_1004776	Not Available	1087	Open in IMG/M
B570J29619_1005829	Not Available	968	Open in IMG/M
B570J29619_1006039	All Organisms → cellular organisms → Bacteria	948	Open in IMG/M
B570J29619_1006429	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales → Sphingobacteriaceae → Pedobacter → unclassified Pedobacter → Pedobacter sp. BS3	917	Open in IMG/M
B570J29619_1006696	Not Available	897	Open in IMG/M
B570J29619_1007329	Not Available	859	Open in IMG/M
B570J29619_1007580	Not Available	844	Open in IMG/M
B570J29619_1007983	Not Available	820	Open in IMG/M
B570J29619_1009124	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida	763	Open in IMG/M
B570J29619_1009254	Not Available	758	Open in IMG/M
B570J29619_1009326	All Organisms → cellular organisms → Bacteria → Terrabacteria group	755	Open in IMG/M
B570J29619_1010014	Not Available	728	Open in IMG/M
B570J29619_1010971	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	695	Open in IMG/M
B570J29619_1011058	Not Available	693	Open in IMG/M
B570J29619_1011132	Not Available	691	Open in IMG/M
B570J29619_1011370	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	683	Open in IMG/M
B570J29619_1011588	Not Available	676	Open in IMG/M
B570J29619_1013531	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	626	Open in IMG/M
B570J29619_1013602	Not Available	624	Open in IMG/M
B570J29619_1013829	Not Available	619	Open in IMG/M
B570J29619_1014227	Not Available	610	Open in IMG/M
B570J29619_1015809	Not Available	577	Open in IMG/M
B570J29619_1016320	Not Available	568	Open in IMG/M
B570J29619_1016447	Not Available	566	Open in IMG/M
B570J29619_1016789	Not Available	561	Open in IMG/M
B570J29619_1016956	Not Available	558	Open in IMG/M
B570J29619_1016980	Not Available	558	Open in IMG/M
B570J29619_1018561	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	534	Open in IMG/M
B570J29619_1019165	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia	526	Open in IMG/M
B570J29619_1019303	Not Available	524	Open in IMG/M
B570J29619_1020234	Not Available	513	Open in IMG/M
B570J29619_1020615	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	508	Open in IMG/M
B570J29619_1020654	Not Available	508	Open in IMG/M
B570J29619_1021160	Not Available	501	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
B570J29619_1000001	B570J29619_100000132	F041188	MNLTIEELSTKTVMALKAYAKKNNIELFEAKTKLEILEILASWIPPKKTEEQVQEAGKTKSMTNKIALYSERNLHMDNLGALKVGYNIVSKEASEKWLTHRLVRIAPPEEVASYYGK*
B570J29619_1000153	B570J29619_100015310	F071153	MFSGKFIKKEGKLVYSRIQDKLAYEIFVEGLSENQEIEMFLDLTAHDHTKAQLAKVHACIRELAKESGYTFEEMKLVIKEQSGLTGKSFGECSKSDLMLAIEACIQIGKDQFNINL*
B570J29619_1000444	B570J29619_10004441	F000716	MEKLKKQINDYQLYTGNTYMQYEQDTYNSYQNYLYKRALYGIQAIDEKELTTMCSKKKQRIVNVYKRAQSVLNIAKQKVTIHYTNLLFKQLFPTSPFTEMLLKESETDISFKNTLTFKDLNMKKEDIIFIFMSEGILPKNFLNLTKEPVTLPRLKNEKT*
B570J29619_1000444	B570J29619_10004443	F028489	MKMIGKELKIKHVSDYSKFAVLPMNRGIDSKHVQKMIASIRKMGVLRCVITCTTDIIEGILKTYIIDGQHLATALEREGMPIPYIDIVIESEEDLVEKMAYLNNSSKSWDLMNYINAWKMIRPDYMKLFKWKNMYDIEITMLAIIGVNNAGIRQGTSKIKTGEFKITNSRAEEMCKAFNDIFLKIGMSDRAVKFQFLTAFMQAYGNYNHAKVLANIDKHLKTVKLMTTGDETGQYIRKQIFNLPK*
B570J29619_1000542	B570J29619_10005429	F010462	MLYQLPNGKVVYLSIEEYLNLSDEDIQYLMSIDYGEYMPDPFADSAINKKSKEEYYDFEYYPQDDEAINXIAADDIPFDDIIDLSDNLDI*
B570J29619_1000553	B570J29619_10005532	F021250	MIVEENLEGWNNIPVKSKEVIYPQSKDDKAPKNYFLGIFCGSRGSGKSYLFTKLLKTLEEKKAYXDDKLVPQRIILISSTANSDSNXIFKTLKNLDWDNDVIDDYNDDLLIMKMDELKTDLNHSKDYKLYKEAWKKFIHCKDIDELDDDELKLLYSYDFIPFKEFPKPKYPDGFLIHWIIDDMLGTNIFKNGRSTFTNLCIRNRHIIPGNIIIAIQSIMSVPKTIRLNANLLALFKFADSDTVLEDVYPLFSAFIKENEFKELYEYSTKNHLMHW*
B570J29619_1000553	B570J29619_10005533	F054611	MVDIDEEKLQNLMELVIKEHPDLDPYVVWIISANFLLNEQGVYGDEKLAEQLREQRNKESGXNIRVV*
B570J29619_1000553	B570J29619_10005535	F009252	MDKINIYINSKNRDLSEKISNFTVRIPQNLLRLSQGEYFTLNVNGFYCYNSWFNCIDGFNNEFQLIIKNINDEIVETYNYKLNDGNPNVNDVKSNLNGLLINKVLVSYDKQRNKFIFKRSLPVSTQNYTMYLKIINSEDFLGFYKSDRNIEILLPYLQNVFSNNIINILGDEAIIIKINGDCILAGNTVDNFGTETYEPSNIIFMKPIDVPSNGLLKYNNEDGGDSFQYRLANVEQITWFTLSVYNQDDELIPNFSDYILLLQFIRHKTEEGKVEILLNSLLDYVKQIYLMISHFLFPAMT*
B570J29619_1000705	B570J29619_10007053	F021939	MKKINFEEITLRQELSSRGGGIEIDLTTLGFKGERMSAYQNYLGGGMLGAISENNTINAYGKEITSKKQLKXEKIAEELKRYFHSLTNPEEGEWESLSYEQNQNLPTXAY*
B570J29619_1000747	B570J29619_10007471	F059676	YIMPVKGIGHSNYTSRPMEKTTSMSKHVADHGNKTNYNKVGK*
B570J29619_1000877	B570J29619_10008774	F073190	MNKGVKRSNTGYKGLADISTIQGFXXHPRFGHRTRIYLHMWVVRDSNPRPGD
B570J29619_1001031	B570J29619_10010311	F086627	MKFIKYKQVARITLYGFDDLYRDNDSSIFTDDLKSEYYTTNLNAGVQVGKNAKRLRFQIKGLDNVKLSENARLCMESINVPVLYDGNNFDFKSLGLTIVRMSNLSSLNCFDSQGNGQTDP
B570J29619_1001031	B570J29619_10010313	F023523	MISEQSLDGWDNKPVKFSNVKYPQTKDNNAPQNFFLAIFCGSRGSGKTYLLTKLLKLLEEKKIYYEEQEIPQRIILICSTAHSXSNRVFKSLKNLNWDEDVIDEYNESLLQDKMHELKYDLDQAKEYKLYKTVYQKFKECKDIDELKDDEMLLLYKHDFKNFKDLDKPKYPDGFVTHYIIDDMIGTNIFKNGRSLFTNLCIRNRHITPSNIIISTQSMMMIPKTIRLNANLIALFKFANKNTILDDIYPTMSAFITEEQFKNLYDYATEQPHDSLVIDATKGKPIFKKNFESILQIN*
B570J29619_1001075	B570J29619_10010752	F059906	MRYFLPLLILIVSCSAPKRAQYHYKRALANGLKVVQDSDTIRIATVDSIPIVRNDTIFWEKVITYKDTVVQYRTVEIPKTRWQTRLQYKYLTKIEKIKGDVITKKHEVVRYRLRWWPFWLGLAIPFVLRLAWSAILSKLNR*
B570J29619_1001201	B570J29619_10012011	F051731	MMNTFEHNRNILKSINTFNLLEKTRYEAPKDIKQTTFSNPLPKQKYHKIIDNSKMNNPYIGIAHIDYVKKDTPPYYGLHETGSKSISYDDFFKVK*
B570J29619_1001201	B570J29619_10012015	F086627	MKFIKYKQVARITLYGFDDLNRNNNSSVFTEPLNSVYYTQNINAGVQVGNNAKRMRFQIKGLDNVKLSENARFCM
B570J29619_1001286	B570J29619_10012861	F073190	MNKGVKRSNTGYKGLADISTIQGFDLHPRFGHRTRIYLHMWVVRDSLSNLQTIPFDPLCGYIRS*
B570J29619_1001514	B570J29619_10015141	F069742	VYERKQDSQVFYVIPVESILGKLPVVPIGATGTIPYSMRQHAADFVDAAFDTREGAGDGSRWWYINTWALSWSRERGEK*
B570J29619_1001631	B570J29619_10016312	F019088	MIQEIKLNGLDNKPIKTTKKPPPRSINENLPPCYFTSIFIGSKGSGKTYSLIKLLKNYEKYPIYDNEGHKLEMRVIVFCPTIMSTANPIYDTLKYLDEDDIIMDYSDDKLLNKLDEIEKEKEEIEDYKKYVEVWKKFIKIDENINLLLPDELLILSKYDFKEPSDIPHPPFKYPRINFLVFDDLVSDANAFKKGHSAINHLTIKHRHLQCNLLFTTQYIKAIPPVLRRNLDIFVIFKFANVQSVXEQIYPEISGVIKEEDFKIIFEYATINKHDALIIDQTSKHIFKLNWDTALILN*
B570J29619_1001880	B570J29619_10018801	F017607	MNIDSVYFKKKDIVNSREAFNELEKIRLQAKPTKKVLILDPSNIPPDMMNTIRNNNAFEDEFWRTHNKYKLTPHIDFKPKYTPPYYAPHETGYGSFN
B570J29619_1002588	B570J29619_10025885	F019022	MIRKMRWIFWSIGASVPIYRNTYWDYLGRRVAWRDSLSGKTEEQKREEAEALIGGWGYVPRFTPNTDYSIKARKYAL*
B570J29619_1002895	B570J29619_10028951	F024729	SIHTDYANSPCLFELADYNKIELTKCRRADDTLYNLIKFDNIPNVKPSDFTETDEYKNDINICFTNKKRIEINHIKMKELYNKKGRRRGLKLEGLSYDDRSQAVILYKGTPIISKVNNEDIGIFNNQRYKITNIDTFTITFEDDLKHEFKVSVKDFQKFFLVAYATTTHSAQGMSIGEPYTIHEWDRMDQRLKYVALSRSRDIKYIHIMK*
B570J29619_1002963	B570J29619_10029632	F080938	MNIHGVDFHIDDNNYKHFKSLPKIQQEAIKQTMILGFLKDRYY*
B570J29619_1003074	B570J29619_10030741	F080938	MPKNKNVLMDIGGVKIYINDKNYEHFNSLSKSQQEAIKQSMLLSMLNDRYY*
B570J29619_1003425	B570J29619_10034251	F059906	MSSNDSHVTSIMRYFLPLLILIVSCSAPKRAQYHYKRALANGLKVVQDSDTIRIATIDSIPVIKNDTIVWEKVITYKDTVVQFRTVEIPKTRWQTRIEMRERIKIEKIRGDVITKQHEVVRYRLRWWPFWLGLAIPFVLRLAWAAILSKLNR*
B570J29619_1004423	B570J29619_10044231	F034341	MELYSNENNFNIFYEKKRKELKNLQTLNEFVKPNPYFVYFMFKDTIHVDDYGSIKETLFKFPTLNKVS*
B570J29619_1004776	B570J29619_10047761	F016643	INLDQSIIDIEINDAVTIELQDSTNTFVPIFGGTVTEFDIGIAASGVVGINQSVSILALGALSRLPKALTEGVLAKDFDGVQILTILTDLLINSWNEVPAALQWATYDPTEQWQDAQNTGLGEIDTPGNYELANRGASTTNVYSLVSALATSGLGYIYENALGQISYADSTHRSIYLAANGYTDLSAAQALANSLSIQTRAGDIRNEIVIKYGNNSSNEVVNSDATSIGLYGKLAQIITTTIENASDAGDQAAFYLTLRAYPQANFNQITFELTNPEIDDADRDALINIFMGLPLRISDLPLNMASGTYLGFVEGWTWRAAYNSVSVTAILSPLAFSLQAMQWQDVAIAEQWNTISGSLD
B570J29619_1004980	B570J29619_10049803	F096054	LTPNEDDDDAELHRKLVRAKLARKRAEEDLKLLCNRIGLLKHEEGKVS*
B570J29619_1005829	B570J29619_10058291	F085617	MFISQAARLLVANKEPGFFFYYNPRWFIERFLGRTAWLNEIPAEPARWTLMDEIFVKLSGLRXGVTQDIKVCGYNYRGHLPWSPIYREDLDCPRIFVGRGFNNFISALLICFYPALRSRHLRCIFDGDSAPNFVYGNGRDKSPLLPRLIATNHKTHITIVANAVWIRDRKEDLLVSTGRGNLAIAMCMHPRLGRESPMNILSFEXLHKIVK
B570J29619_1006039	B570J29619_10060392	F082156	NMHRLGESFVERVTDVRRRVTVDGKVTAPGESMEFLALIQGWQSEARRERRERLLKLNDIGLRMALEHATVKDVFFIPEVHFAEEKPMLADDDGWWYQVRSVIWCRTCGKCRVRKERGGFTHEEWGKRRPAICIACDGTKGVTRVSSEKTKRIHSRVKHTSNPPARRPRAAQGRGVAIKDVTSGSEDDEVEEVEWGKCMYGVRMTPAHPWYVGRE*
B570J29619_1006429	B570J29619_10064291	F102832	TQKYKMNIELNQKPQLNKHAVMTSYYLVRYYGGSYEDSFDVVVFATNKKSTATKYCTKFNKLLKKWKEHYKQFETKKYGIMTWIADEHIETKFYRWNKLQKISRCYYEVVSVR*
B570J29619_1006696	B570J29619_10066962	F023494	MKGNTALNRAFISFPQLNRLVTTTNFIDKKCHLREQILIRSFKSNQLSKLKTKELG*
B570J29619_1007329	B570J29619_10073293	F078285	PINTNTIRALSIGIDGDISFSHNNMESNLNNSVYKASDLIFQTAVNVPKGYLINYQNIDGGDSFKYTLGNHDRIKYFILSVYDQDGNTIKDMTDYIIHIQFTINKISQQEQLLKTLIDYNKQSYLIIGHIFDILNNMYQYFFRKN*
B570J29619_1007580	B570J29619_10075801	F078425	MARGNTIYLKSESGRVESFDQFRQNLKKLGTSETLRFRELRNVLKTEARPLVERARKEAYNELQGKAGYKARGVKDANKKTNGAFYNLYKTIDVFANKGTVKAYVVVGIRSSKKKGAYYAPWQLFGGTAKNFTPKEFFDKALQGSDVPRKAAEKISNFVQKRIKAHLR*
B570J29619_1007983	B570J29619_10079831	F004995	VNDVRTNLNGLLLNKVVVSYDRIRNKFLYKRTLPITTDNFKMYLRIINSEDFLGFYKSERDKLILLPYLNNIYSHSIVNISGDEAIIIKIAGDCILSGNTVDNFGLTTYQPSNIIFMKPIDVASNGLLKYNNEDGGDSFQYRISNIEQITYFELSVHNQDDEFIPNFSDYILLLQFIRHTTEDNKTNSLLETLIDYVKQIYLIISQIVFPPSY*
B570J29619_1009124	B570J29619_10091242	F045792	MENAKVYAENVIRNRKEALGLRRFGVKMGALSAKLESAHRTQQVS*
B570J29619_1009254	B570J29619_10092541	F038566	VNSFYCYNDFYHCNENCNGFNIIVRTNSNVVLGQQMFYLPIGNPNIIDIVNYINLILQTNDVLSCSYDNIKNKITYTRLMPQESVNFTLYINTMNAGSFLGFKNNIEVIISFSGTESTNPINTNTIRALSIGIDGDISFSHNNMESNLNNSVYKASDLIFQTAVNVPKGYLINYQNIDGGDSFKYTLGNHDRIKYFILSVYDQDGNTIKDMTDYIIHIQFTINKISQQEQLLKTLIDYNKQSYLIIGHIFDI
B570J29619_1009326	B570J29619_10093261	F086808	LVLLSLLRPRTSPIGMVRIRHPNLFMDKRDINWAKMPTFCDK*
B570J29619_1010014	B570J29619_10100142	F010898	MDKINIYINSKNRKENEYANKFTVKIPNNLLRLNRDEYFTLNVNGFYCYNSWFNCIDGFNNMFQIIIYDSNDNITSVFDYRLQDGNPNVNDVRTNLNTLLLNKVVISYDKIKNKFIYKRTLPITTTNFKMYLKIINSEDFLG
B570J29619_1010971	B570J29619_10109711	F089425	MHHIYAQYFHPETLLERVRDVRFYRTPRTLFKGFTVPDWARSKEKHGWEIDTYSREAWENAMHDLHAEWTPQPWGGERQKPNPL*
B570J29619_1011058	B570J29619_10110581	F054611	MADIDEERLQKLMELVNKEHPDLDPYVIWVVCVNYLLNEQGIYGDETQAQKLREERNHE
B570J29619_1011058	B570J29619_10110582	F032550	MIIEENLLGWNNIPVKSKEVIYPQSKDDKAPKNYFLGIFCGSRGSGKSYLFTKLLKTLEEKKAYLDDKLVPQRIILISSTANSDSNIIFKSLKNLDWDNDVIENYEDDLLIMKMDELKTDLNHSKDYKLYKEA
B570J29619_1011132	B570J29619_10111321	F067410	MQHFNIHQDTLSGMYPGINSIGAFREHSYASIVSLNIPGETEMYTVSGLDTEQTPATVEWKVVSEAFPVNDITTADNCTPYLIAAYNSHLEIKAGRIVSLIP*
B570J29619_1011370	B570J29619_10113701	F017631	MKGETDMMALYNQKFMEALALAKRLADGMERQDAYRSGQFRQKVT*
B570J29619_1011588	B570J29619_10115881	F080900	VKRFFSEIHGLTWTLAGTGMVLITLSGNTRSLGWQITLVALTVHLVGVFIKEKNE*
B570J29619_1013531	B570J29619_10135311	F038208	MIDRIEEVQCMIAAIQHCHDRSADHSSRIVKNLSWFEYVAQMGESMAAELFVAKRLGYDYTPGITWDKSKADVGEHIEVKWSANPASNLWIQDSDRHDRDIAVLVTG
B570J29619_1013531	B570J29619_10135312	F000403	MGATDMSDYVEIIYPQEMKARLMCNGEIVEEYKIEQCDKCSQLRRLDHFGYQKGYDKQDNIIWFCGDCR*
B570J29619_1013602	B570J29619_10136021	F033698	FRYKQVARLNFSGIDDELNDVDSSYYNTKQKLFDNDEINTKLLRFRINNLRDLKLSQNAKIILESLYLPSINDATLRMKHDPKIVLRFKNVSDSNCYDSSNDNNYPIIFAYSVQSRQQRVVSTNTTTLVGAINTYNNNIEIRNVYDNGITFFNPSPDKLYNFTISNTFTNNTVFEFEIIYEMDNGINIVPADDNTEFYKFQCSFIIC
B570J29619_1013829	B570J29619_10138291	F004816	ARITFYGFDDLYRDNNSSVFTEPLNSVYYTQNINAGVQVGNNAKRMRFQIQGLDNVKLSEHARFCIESINVPILYDNIDDRKSVGQTIVRMSNLSSINCFDTHGKGNTDPVIFTAQTHPYQQRLGTVTNNVIYGNTESSPVFYNPYPEILYNFPISSNFLNNRYFDFTFIMQFMPGDSITLADDQIYFDAFHISFIVYDLDEEELL
B570J29619_1014227	B570J29619_10142271	F088244	LQPLEAAGLISRSEQILKQYASKASLTAKDLIALIQDVLHNPEFNADDVDTDMLKRFADAIDSGDLEIISMHKEGDGAQKLELFKRPAEKVLRELMADVRLAGCQHFAFKEYLDPHGNRLFAGHSNGSVTFQLAQIRVGADKVPVSLVIYIDATYIKKGIPIRPIYCKSYTISYTTSYTMSVAMC*
B570J29619_1015809	B570J29619_10158092	F001530	MQITKEFLESEIRDLETEAQKAQTFLIQSQATIQAYKMLINRIEAPELEQQNDDAN*CKTRAPKPKWFFCA
B570J29619_1016320	B570J29619_10163202	F023494	LNRAFISFPQLNRLVTTTNFIDKKSHLREQILIRSFKSNQLSKVKTKELG*
B570J29619_1016447	B570J29619_10164471	F030344	YINTMNAGSFLGFKNNIEVIISFSGTESTNPINTNTIRALSIGIDGDISFSHNNMESNLNNSVYKASDLIFQTAVNVPKGYLINYQNXDGGDSFKYTLGNHDRIKYFILSVYDQDGNTIKDMTDYIIHIQFTINKISQQEQLLKTLIDYNKQSYLIIGHIFDILNNMFNYLFKIKSNV*
B570J29619_1016789	B570J29619_10167891	F031011	NNILSKYYYIMFDEYTAMTNYMTYDSSSLNQYNYKNLNDNFPIYQQYENIYNFTRQINPITLSNVNAQTRDPSNLPSDIRPTIYDGVDGVYGLHSMNDIVQHQTPKNNPNNWLDNIQGKSGYYNQDEHTLNNKRPISYIQIGQATSNQDINGYLIF*
B570J29619_1016956	B570J29619_10169561	F017959	STKSLDYVIGTFRIPNYDVEGPVLNTRLSSIDSLEYGATFGTADNQIDAGLRRVYNQSKYFAHNGDSIKTTQWKIGNTPYEAQDLKEQFNSLLQHFNIHQDTLSGMYPGINSIGAFREHSYASIVSLNIPGESEMYTVSGLDTEQTPATVEWKVVSEAFPANDITTANNCTPYLIAAYNSHLEIK
B570J29619_1016980	B570J29619_10169801	F073122	AAVPTMIVSNMRVNLFLLLAIATTVKSSAQANIRHGETALCISAPAQRAPPKARAR*
B570J29619_1018561	B570J29619_10185611	F097335	MSNELSNEQQAMSQLYSVLCAVVQSDRTPKVTAEAVVATLQKLFEDENGPFMADEHMMGMTMAMAEAMNDIVRQRNKQIQRAAEGNSILANINWN*
B570J29619_1019165	B570J29619_10191652	F095529	MESSTAATFPKKPARSAGAAGKEMKLFSNYFSIDFDSKDVKGVNKYTVKFEPEIPDNSRALRKEVLKKCRDKIKEHLEFYIDWGLCVFSLKKVAELPIFEAEHDTT
B570J29619_1019303	B570J29619_10193032	F041609	NGDCILAGNTVDNFGTETYEPSNIIFMKPIDVPSNGLLEYNNEDGGDSFQYRLANVEQITWFTLSVYNQDDELIPNFSDYILLLQFIRHKTEEGKVEILLNSLLDYVKQIYLMISHFLFPAMT*
B570J29619_1020234	B570J29619_10202341	F010246	MSVFNPVWRVIIGGETYTNYALANLSITSGRTNIYEQANAGYVNLELINLDQSIIDIEINDAVTIELQ
B570J29619_1020615	B570J29619_10206151	F018935	YSYYDYIKQYDSRFLNKYQSHTHWWAGRGSGFMELLRMKSVRLKSNRNWMWFDIRYGTKFLYIVYFPQLFFLTLSYLITPIFRRMDERYHLRFADGEFDDISDNEPFVTYQLRKKPMTRRKYADAVKLVYNGNEEYDYASEQPQRYR*
B570J29619_1020654	B570J29619_10206542	F029658	ISKGIGQVANIARNVGQAVQNVRNIGSTVNSMSGGRIGSSPFGQKMQEITNKVESGANFIANNEGKAQGLINDISRKINA*
B570J29619_1021160	B570J29619_10211601	F074408	NFIDVCKLLGNYNDKDVYLYTSSKFKSNSIFYSPNYYLLPKWADPEKLTLMQAVKIXXXRXKNKNSDNINVKYLMGESKTADISVKE*

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300002305: Freshwater microbial communities from Lake Mendota, WI - 03OCT2011 deep hole epilimnion

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences