Sample 3300002340

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300002340

3300002340: Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI - H_11min_Aerobic no depletion (Metagenome Metatranscriptome)

Overview

Basic Information
IMG/M Taxon OID	3300002340 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0055735 \| Gp0057359 \| Ga0004984
Sample Name	Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI - H_11min_Aerobic no depletion (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	Y
Use Policy	Open

Dataset Contents
Total Genome Size	1916174
Sequencing Scaffolds	1
Novel Protein Genes	1
Associated Families	1

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → Burkholderia cepacia complex → Burkholderia cenocepacia	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Wastewater Treatment Type I Accumulibacter Community From Ebpr Bioreactor In Madison, Wi, Usa
Type	Engineered
Taxonomy	Engineered → Wastewater → Nutrient Removal → Biological Phosphorus Removal → Bioreactor → Wastewater Treatment → Wastewater Treatment Type I Accumulibacter Community From Ebpr Bioreactor In Madison, Wi, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Location Information
Location	Madison, WI, USA
Coordinates	Lat. (^o)	43.078418	Long. (^o)	-89.386482	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F023044	Metagenome / Metatranscriptome	211	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
JGI24209J29981_11637	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → Burkholderia cepacia complex → Burkholderia cenocepacia	574	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI24209J29981_11637	JGI24209J29981_116371	F023044	FDFSAIFAQLQEVAAALAQQALGQVVGSLAGLIGGRASVDLAAIFNGFLADITGAVTGIGQHLLNQGLAAVLGGLGSLGGSRFLGDLLSSLSSQIGSAVTAAQGALSGALGSLGALGGNILDASKPHWEQLQEQLVGHGLNVLGSLSETINNLHGSITGGR*

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