NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300002348

3300002348: Freshwater microbial communities from Lake Mendota, WI - 12JUL2011 deep hole epilimnion



Overview

Basic Information
IMG/M Taxon OID3300002348 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0063444 | Gp0055836 | Ga0003618
Sample NameFreshwater microbial communities from Lake Mendota, WI - 12JUL2011 deep hole epilimnion
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size31834533
Sequencing Scaffolds31
Novel Protein Genes34
Associated Families32

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available21
All Organisms → cellular organisms → Eukaryota2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage3
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amphibia → Batrachia → Anura → Pipoidea → Pipidae → Xenopodinae → Xenopus → Silurana → Xenopus tropicalis1
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon2
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Ostreococcus → unclassified Ostreococcus → Ostreococcus sp. 'lucimarinus'1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameFreshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)freshwater lake biomeepilimnionlake water
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000951Metagenome / Metatranscriptome822N
F004758Metagenome / Metatranscriptome424N
F005196Metagenome / Metatranscriptome409N
F005844Metagenome / Metatranscriptome388Y
F006546Metagenome / Metatranscriptome370Y
F007021Metagenome / Metatranscriptome359N
F009402Metagenome318Y
F010082Metagenome308Y
F012550Metagenome279Y
F013607Metagenome / Metatranscriptome269N
F016272Metagenome248N
F018368Metagenome / Metatranscriptome235N
F018650Metagenome / Metatranscriptome234N
F019105Metagenome231Y
F021965Metagenome / Metatranscriptome216N
F023850Metagenome / Metatranscriptome208Y
F026797Metagenome / Metatranscriptome196N
F029726Metagenome187N
F031358Metagenome / Metatranscriptome182Y
F032654Metagenome / Metatranscriptome179Y
F038093Metagenome / Metatranscriptome166N
F041768Metagenome / Metatranscriptome159Y
F043897Metagenome / Metatranscriptome155N
F043936Metagenome / Metatranscriptome155N
F052550Metagenome142Y
F062475Metagenome / Metatranscriptome130N
F063372Metagenome129N
F070903Metagenome / Metatranscriptome122N
F072336Metagenome / Metatranscriptome121N
F073535Metagenome / Metatranscriptome120N
F081341Metagenome114N
F083715Metagenome112N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
B570J29594_1000001Not Available83978Open in IMG/M
B570J29594_1000003Not Available27963Open in IMG/M
B570J29594_1000535All Organisms → cellular organisms → Eukaryota3942Open in IMG/M
B570J29594_1002153All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1852Open in IMG/M
B570J29594_1002466Not Available1666Open in IMG/M
B570J29594_1003589All Organisms → cellular organisms → Eukaryota1262Open in IMG/M
B570J29594_1003989Not Available1162Open in IMG/M
B570J29594_1004876Not Available997Open in IMG/M
B570J29594_1004937All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage988Open in IMG/M
B570J29594_1005153Not Available959Open in IMG/M
B570J29594_1005305All Organisms → cellular organisms → Bacteria938Open in IMG/M
B570J29594_1005391Not Available929Open in IMG/M
B570J29594_1006766Not Available789Open in IMG/M
B570J29594_1007033All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage769Open in IMG/M
B570J29594_1007157Not Available759Open in IMG/M
B570J29594_1007747All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amphibia → Batrachia → Anura → Pipoidea → Pipidae → Xenopodinae → Xenopus → Silurana → Xenopus tropicalis719Open in IMG/M
B570J29594_1007932Not Available708Open in IMG/M
B570J29594_1008021Not Available703Open in IMG/M
B570J29594_1008405Not Available681Open in IMG/M
B570J29594_1008628Not Available669Open in IMG/M
B570J29594_1008670Not Available667Open in IMG/M
B570J29594_1008718All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon665Open in IMG/M
B570J29594_1008953Not Available654Open in IMG/M
B570J29594_1009526Not Available630Open in IMG/M
B570J29594_1010313Not Available600Open in IMG/M
B570J29594_1010898All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Ostreococcus → unclassified Ostreococcus → Ostreococcus sp. 'lucimarinus'578Open in IMG/M
B570J29594_1011016Not Available574Open in IMG/M
B570J29594_1011121All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon571Open in IMG/M
B570J29594_1011191Not Available569Open in IMG/M
B570J29594_1011331Not Available565Open in IMG/M
B570J29594_1012728Not Available526Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
B570J29594_1000001B570J29594_100000117F010082MLSPRLTNCIDCTTIPVLLTDIDCKLTDLAKDQYNNIVFSLNNSIPEVAIGDLLNYKRILTYKFCNPDYASKYTVAMIASKIKILIHK*
B570J29594_1000003B570J29594_100000326F032654MKNQFFYTRKELVSGTPENPEFKEFRDSFNIEKVVRTITMEDGRMLVLLDDLHERAQQVPDVDPKTNKMRGYKRERNTFQSEIYLEPADAVKFYNQTTI*
B570J29594_1000535B570J29594_10005354F018650LAKKYTDWWTFKPSSPLKAYLSDHEIVMDEYFSLEELRCQVMSIIRHRAQLSNHNVIVLEDQELQMVFDSWYIFVPDVENHLLAHVIPAPADISNDLQNKHMTEEFYINSPVDLLYKDPSSVFWILPFVDFAMNQSTGNVRSWKKLLXMFTKFCLNNTTYFTRVSDSIIRINENTCLTSLFGFKYFHRSQIEHLLKKITKFLGRKNSMVQSCHFIKHNPVFNKTTKHQNVFAFIDDIINKNNDMMPDFQTGLYI*
B570J29594_1001758B570J29594_10017583F029726IKARVPVWLLVGALAAQYAINSASQPTEPNCRINVQRVHQSTYSLEFKNLSEAKLKISTLCDVPQAYTSLTVKFEEVLPNGGSNIVKTVRNIVARPKPERENYVLIENLTVPCNSKGQAEYLGKAFGQIHLKDNRAVPVSGESDKPMPLICRISAK*
B570J29594_1002153B570J29594_10021533F081341KESVSVLETIFSKFNKYVESLEMAPLKVLGPGGSGVYYKQDMAENPEKAYGDVDILVEYPLTEPQSRRVEIDTMKEYNQLMLKWIQENPQPEIDAEESDAISDGSLKLVINLTDGPVQVDIIPTFTYSAEWAKSRYTPIRGVKGFVVGFLYQSFGNALDVSVTDRGVVAKIKNGELVGPNMRKDVEEKIITRDFSKFILHLAEFVDEFAGTKRELVIDDYLNEHPGIDVTQLSLEQICNGILGFARTLEKTGTYDLPNFKYNSSKEFLEEVVKIYAQKLHKHRTSSKYDKALTDLANQQKDKVMHDAETAFEYVSNKLLDGTNI*
B570J29594_1002466B570J29594_10024664F026797MAASCSDGGAAVCSDSDEHIRHVSGTVALKKVAAEGNLYTFRRPDYSAEEWRFLYLTTSTDLYIDSIRLVGFCGAGDINWAIVTRMKESDNPPRESFHGIFPKECLPMLHYMRPQFRFLIYFGQNNRRVNMA
B570J29594_1003589B570J29594_10035891F018650EEELLPEINRLAEKYADWWTFKPSSPLKAYLSDHEIVMDEYFSLEELRYQVMSILRHAAQFPNNSDVIVLEDQELQMVFDSWYIFVPDVVENHLLSHVIPAPADISNDLQNKHMTEDFYVDSPVDLIYKDPSSVFWIPSFVDFAMNQSTGNVGSWNKLLFMFTEFCLNNTTYFTRFSDCIIGINENTCLTSLFDFKYFHISQIETLLQKITKFLGRKNSIFQSCHFITHNPAFDITSIHPNVFTFIDDIINNNNDMMPDFQTGLYI*
B570J29594_1003989B570J29594_10039891F013607PRPRRLDERHHREEWDRRREASPSDREPPGLYRTAPPRSGRPRSSSREKAYSGSQRDVNEGTINVLRSMHAKLMTMQGQTGKNSGLPYFDGTLKDYPKFRRRWHTFQETYHKATPQRELVNLFRENCLEKKVADRLRSAETMAGCWRVLDPFYSRPTQYVQDLMSEITATRKIQYSEYERLYEYYALIRGHITEARKANLEETLLTQANIALMEQPLHMREIEEWRNRQAKYAPRYHAEAFVEFVQDREXWALKNVAYSTAPSSQSSSGEGQKGRKSYDKKEAKVMAVKATTKEEPHFPPPRRWSPDNPWGRPCIMDECSEEHAPPSCAVFKSKTPEERLAAVRRRELCVLCFRHLDTKRCWSLGKLNNCNVRGCGRGHNYLLHDVL
B570J29594_1004876B570J29594_10048761F083715MISQIRDGQFKLNEFLMIDNTAKTVDCGKAVDLTPVCVQANIYESILEPAVRAQFEFYEAKGAGDKFVFTDKKIIIDFTTDEDNSKSSIRYELYVINKPVTFNSPDDKALIYKVECVTYEAWKASTIKNTPLVRKNIECENMVKAYLNLTKSNKPFFAEKTRGLHAFNFTEKTPFECIDQIRLEHAMSQEFNGHCFYFFENKYGFVFKSMEALIKEGIKNIGDKCFTQSTLTNLNVTGAKWRNILTTKIIQSGNEGILRLIGGGRSTCQLQNSVTGDIISFQADPKNLQFETLNEGSASTNLKAQVEKTEDGNEGAPRAIPFDPT
B570J29594_1004937B570J29594_10049373F062475MSNKIVFSRFGMGPDPRVSEVLMSEIIKNKSEAKILPLPGIIISVFESELTPTQIRDRFKNDSELSEVPFMVTTLEDFDINLPEKIRKSVFGIGETSSPSSSASHLTMDDLLELISVKGLNGLTPQE
B570J29594_1005153B570J29594_10051531F000951PIYTELSEIDVYTEMARLDLQYDDLRTDKPRTASLARLCKALCIGRYIALGNQPPLQYKSWALVCPMNFENPDMPHGEQSHLAVDNSTKFIIKSMKHRDTIKDASGKTGHMIIPELYHYNNCMCASDCIANNQESLHFLRICAPRSLRQQYAEADHLPDARNAVSIGKKYGNSHTVYYSSVSVFGTVTPQMICRQPITELTRKSPIFRTPQYSHVDMSNDLHLIRAIGACLSRQEIHQYTKNFTESCKMDETTEETGNLYRFPKMNRNRQNTDILSLNPSYNSLDQALANEPLVEPFMGPQACPYCPTILQITEPKDYL
B570J29594_1005305B570J29594_10053052F052550MNTTINNNLSVYHVVTSVGKQAFCNIEQLNEVVKYLDTHQGYFKIFHFWNNKPQKLSKKALDQLFEGSQLKREFNY*
B570J29594_1005391B570J29594_10053912F009402MKKLXEQFESAGFKYKQTHREDMFAIYERKYINSTKDSHYESIKIQSHNGMEIAGNKIPPSEYYPSSNSWGRHGYTCITKKEAYTRLDKMMKEDVINKEAANKKAERKNAK*
B570J29594_1005391B570J29594_10053913F038093KNHILLLTHILMDKIKINFLILRYGAILHTIFVFPILYMADIYANTPMFWAFLLNHVMFGYFVLVKGCALGIEQTINIIAHQDAAKAREEDTNKNN*
B570J29594_1006766B570J29594_10067661F004758ATTARDAAQAAGNTPAAIQTAYDNALRAQQGINTRIFAQPPRWVLIKRKALNDTRMEDSLLQYIDKKHTQVDWYSTITTIHKTGSKIGYTLDHYQRVLHRFISYFKPEMNQLGQKMGLHELARLLMTSTMPVNDREMVIHEIKKLTRRQTESLRVPMSNLYSLATTYYNDDPDAESQRNKLLFNGLQHFTTGVTKEKLTRLIKYSQLQKIKLDYHDTLETCILSEKTNGEPTEDLQFGQSKETILVFQANIAPVDSLLDNDI
B570J29594_1007033B570J29594_10070332F072336MLKVIHLISCDTLIGEVEENEDEYIITHPFLMEIVDDSDQGSGVRMDYLLAFSKDNCVHIKKSVVLYNYNPSDRMEEYYGRLVEFTAKRXNDVILKQTLESMDEMDSRLKSLLTRRLVGKSTVN*
B570J29594_1007157B570J29594_10071571F005844RLLATVHPAAAAAFSIFNMLGSAIISILKALTPKAFEMCDFATKDKVDEFKSPLVKIVDVIQELKVKQKESPDRVYPLNELLKRFEKEMDSDEKDLIDNILREQKWIK*
B570J29594_1007747B570J29594_10077471F012550MHYACVRLELLLRYATLALRLXYACVTLVLRLCYACVTLVLRLCYACVT
B570J29594_1007932B570J29594_10079321F018368MTITTLTTRGQKISNQIVSADVIEINQGPFSFTALTESITTEEDKIVLKYEVDGEMCNHEITXDMLNNAHVEDGHIVFAWGTQLSISLYKLAVM
B570J29594_1008021B570J29594_10080211F062475GPDPRVSEVLMSEIIKNKSEAKILPLPGIIISVFESELTPTQIRDRFKNDSELSEVPFMVTTLEDFDINLPEKIRKSVFGIGETSSPSSSASHLTMDDLLELISVKGLSGLTPQEKSRLDELRSEF*
B570J29594_1008405B570J29594_10084051F007021GPPPRQNQEAGQATAPVLGLGLEAIQGMTNAMNAIANQVIRSSGRSGRNAGWPYFDGTFRDYPGFKRKFESFRTTYHRGTPTRELFQQFREMCLPEKLSIRIKSANTMENAWTRLDAWFGDKNLFIRDLMQDIRSVSPIKDGDDERLMDYYVTLQAHIEEAHSAGAXGMXLXPANVELMVLPLTTWEKRLWREAQGKLAAEDRSWYMSRFVNERLTYAINMVATSER
B570J29594_1008628B570J29594_10086281F043936PIKAQLKLKYEDFKKRIKKAKEDVLSGKAIEDFGEKLLQELIDFVLNLPIPLFGTLGNLIGFDNEERKKKETIHSKEELWHRIEDAFEDAMEKIKKFFQTDLIAKIHDIILKAPGWILQQFPIVGKILDTIKLIIDICRGKVSICQVLNIILKPIFGIPDAILKFIPNCIEIRRTKYGLEPNPDNLPKWAQPASATV*
B570J29594_1008670B570J29594_10086701F031358GMLVLDRTDTKGSPVGTPTTDRIDIRDSPVGMQTTDRXXTLGSLAGISLDLDTXKGLPVGDSQHLASGLHLETXVDRGLIIDRSQSLLVDQGHPDIIPIQDKVGHPTERTGRTGTVPCPQGTPTLS*
B570J29594_1008718B570J29594_10087182F016272DIECMILANSFEEAAANGLKKILNKLGLKTNLSLLISVDLINNHEIETSIFQTSSILNDLGYFKLAKDLESLRDFFLDKGENSH*
B570J29594_1008953B570J29594_10089531F043897MTNEFANISAESNMSSMITLSFEEIIEANAWFDMVSAQFDEVEAAWDRLVEYVDNI*
B570J29594_1009526B570J29594_10095262F006546MKWKYIGNRTGDAAKGEQYIVEADELTELYMKSLPYPQTVNVYVVQPPSPRNNWSKNNVGDIIKICNPYYEM
B570J29594_1010192B570J29594_10101921F073535NEDQLSRSFYELGQGEVFDFYDFRETDRDYGDGEGNGIELRSITMVSDVIPESNKKRKVMKESKLDSFIDSLNESETKFLIEKLQKKLF*
B570J29594_1010313B570J29594_10103131F019105MKKKLLIVGGLFITLVVIQVFSSGHGHVVVVEDNIQLTGENKKLTTANKKLTTSVNKLEAEKEELIEDKASLENMVSEVIGDLDSTKSVVKDIKNELKNEKDIVRKQSSGKQFEFQPITLPTSDGN*
B570J29594_1010898B570J29594_10108981F023850AVVDSMGTVIFDNPMTSDITXTTDATIMDYPLFLDYDPFTMVMSRTNKIDSCVKGIEVTKAEKELLSKAHLDKVECQKQNKLTVARINREIETWAKTQKYNYYVNWYMVEKSKIDYDLKMGVITEAQYKEKLMGLEKTWVSKMSYLNNQVKEKIKKNLDRATACGKIKDCEKEYLNKVLDILGKERYKKWME
B570J29594_1011016B570J29594_10110161F070903IAPETLIDSIPPSDLDVETQPAENPPQAPATHEIVDEFDDAQINNNKTNELAFVNSLHAHRDLSKTFRDTLRSRKEKLITFFLSKHDQYVKIPGVGEHTESDID*
B570J29594_1011121B570J29594_10111212F021965VYSLETNIAKYMVPRLQYFKKKGKMGIPMKFLPSNYDNLQDEDREKAEKIGEKEINRILDEMIFAFDYIIDPDKYVTFPKSCSWDIKDKNYFNREKSLEAKQAWDEYTKTCDQLETRKKQGLQLFVDHMDMLWI*
B570J29594_1011191B570J29594_10111911F005196PVEAPDGGVPGGRGGIYVPDKDNTLKVLPAPEARSLRSRENXAAQQFRYVDELCAELELAVSMGNVREVKCQRRALAAGLRQAEEAIMRIAEAHRWTKAELDHALDDVRGHALPQKEEADDFLRADEQEXRGQWMSECLRMTQNAINLASQANRALTVGDWSRQDCEEFLDDLEREFKKVNKELDTYPS
B570J29594_1011331B570J29594_10113311F041768LLTYLGVAYTTTSDKKFLDQFNNHLKEREKYFNEEIFISKILTQEELKEFRKGLGISSDLAKDVENPAFEKMDNKTFFSDKYLDYKRRIIENNQNFRTLINDSSEKIIKDEIVKLNIYLYILCLIIILLVYLIKCDNQPIKKKTIKKKKK*
B570J29594_1012728B570J29594_10127281F063372MEDQIKKWIAKGYALEVTTVILENDESEDLDQETLLLDITNAALENMKDDIVPFVNPILSEEQVSAVIDSAAKAQLRNTISEMVDAGLLEAELNESGEVMYKTTAKGCAYDDMIQDGFMTQEDFNKQFKEGKL*

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