NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300002686

3300002686: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI072_135m_B (Metagenome Metatranscriptome)



Overview

Basic Information
IMG/M Taxon OID3300002686 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0046785 | Gp0055324 | Ga0005232
Sample NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI072_135m_B (Metagenome Metatranscriptome)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size27130044
Sequencing Scaffolds13
Novel Protein Genes13
Associated Families12

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available10
All Organisms → cellular organisms → Archaea1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → gamma proteobacterium SCGC AAA076-D021
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → unclassified Methylococcaceae → Methylococcaceae bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMarine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → coastal inlet → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationBritish Columbia, Canada
CoordinatesLat. (o)48.7299Long. (o)-123.5699Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006550Metagenome / Metatranscriptome370N
F014384Metatranscriptome263Y
F015413Metagenome / Metatranscriptome255Y
F058538Metagenome / Metatranscriptome135N
F070306Metagenome / Metatranscriptome123Y
F077350Metagenome / Metatranscriptome117Y
F081198Metagenome / Metatranscriptome114N
F084730Metagenome / Metatranscriptome112Y
F098669Metagenome / Metatranscriptome103N
F099485Metagenome / Metatranscriptome103Y
F101265Metagenome / Metatranscriptome102N
F103871Metagenome / Metatranscriptome101Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0005232J37287_100073Not Available515Open in IMG/M
Ga0005232J37287_102114All Organisms → cellular organisms → Archaea783Open in IMG/M
Ga0005232J37287_103496Not Available1391Open in IMG/M
Ga0005232J37287_104493Not Available516Open in IMG/M
Ga0005232J37287_106921Not Available1601Open in IMG/M
Ga0005232J37287_107109All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → gamma proteobacterium SCGC AAA076-D021613Open in IMG/M
Ga0005232J37287_107276Not Available1115Open in IMG/M
Ga0005232J37287_109992Not Available949Open in IMG/M
Ga0005232J37287_112475Not Available1072Open in IMG/M
Ga0005232J37287_119028Not Available518Open in IMG/M
Ga0005232J37287_119970Not Available558Open in IMG/M
Ga0005232J37287_120714All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → unclassified Methylococcaceae → Methylococcaceae bacterium530Open in IMG/M
Ga0005232J37287_136456Not Available503Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0005232J37287_100073Ga0005232J37287_1000731F098669METATRGRKQKWRLKEAEGLGRKRRIGEAEGREPHESDQGLDSGHGLNPGRKVRRIDQAMEGSPEIVPAKIRKKPC
Ga0005232J37287_102114Ga0005232J37287_1021141F099485IIRNWQHSPSKTQVARTPVKAVSKSLQQSQTFTHEDLMGLSWMLSEEGD*
Ga0005232J37287_103496Ga0005232J37287_1034961F081198SPQSSTMTTEIPTDVKSEKVEEKVKVTIETDGEVEVGKAEATKTEASDDEKCPEGKKMVAGKCVDAKQESTPESSDLVKATEALTSVIENVGKAWEPKSQVAESTESNGFVEEAFTDVDAKQFMDKLFETGYNKLVMDKEGWIEEHTVPGAADVAGNVTEAVSTSGTISGVKQRSNISIQLGSKTATPLRQYGQFEAIPTGQNTARFYRITNPDAGAITESPTTDITAVTHTLTAIDVTCSIRGWRQVVEKANLEDYPASFLNALRETARLEAIRDEHKLILQDLGATDHDFGGVSTAPYHIGGSDGVATTTTTEEDADGAMDEDGITKAKMYLGKLGNSTAPGQLIAFLSEEAFEALISSTGLSEYTQIGNANVTRLGQLERLYGVDIIVTNELLQANNADRNLVCVKGKAWGLASQRKMEIEFQKNIAGQYFDIVWTHRIGVDIIDPNTYIIVSTVAT*
Ga0005232J37287_104493Ga0005232J37287_1044931F101265LKLAIVLRLKRNYHCRSTDVGEDYDLRVIFSKSIGGYIVKTSSSEIVETN*
Ga0005232J37287_106921Ga0005232J37287_1069211F077350VAVTDSALANQIQKTEVDPKQPDIQKLLEELEGKLRGALNVLKPSVNSMCDNLRQAAADIRKDKDATMLWTTLNDMQVFLSLVQQICSSVGTQGPKVVAFDNALGDALGTLETVVVDSESPDEVAAFIESTLIVALGKWDAAEDELRDIAKV*
Ga0005232J37287_107109Ga0005232J37287_1071091F084730YSNRTVAILDSVEPVFTVGYFSYLNCITTGVYFYDSSNCIYGYGTPKRALIFF*
Ga0005232J37287_107276Ga0005232J37287_1072761F070306LAARVVGRAQYPDEGNNDAYPIVEVWLNTHRDRYVTATASTA*
Ga0005232J37287_109992Ga0005232J37287_1099921F006550YVHDAFVDAEFKALAEDYVSDVKAGGRQRMAALRSNTNSAVDIVNVWETVLGKQDRTYAGKNLAKEIAVPNLLISIDTATKFSGMTQLDEGQLSQLKELTYTRQNFEASKYGLKFVIHEEARLKNVHNVLQDSIQVASNKVEQRQSFDVVSLADSSLTAKAAAGAWDTFVSSTDRSTANPLLDLGTSQLLIEGSGVGGKLNRIGMHPLDFAKYMGNTFIRGVASTSPSEVSFEPGTRELPGFPGAGLVLDNAIRQGDVYCVDTEKEPTIALFQGPQRIGSAHDEETGDDKYFIIDYHLASVIQSETGRQITGCTT
Ga0005232J37287_112475Ga0005232J37287_1124751F081198QGYVEEQFDDESAKKFLDKVFENGYGRLVIDKEGWIENHTQEGRITANGSVEEAVGVSGTIPGVKQRANISVQIGNKTATSIRQYGQFEALPTGQTTARFYRITVPDAGAITESVSSDISASTHTLTSIDVTCSIRGWRQTILKAQLEDYPASFLNAIRETARLEAIRDEHKLILEDLASTARDYGGVTTAPYHIGGSDGVATTSTSEEDADGEFDEDGLTFAKRYLQELGQDVGPGKLVAFITPRAFESLATSSSISEYAQIGNPSVTKLGQLERLYGIDLVVTNEVKGDVSNADRNIVAVKGAAWGLASQRTMELELQKQVAGQYWDLVWTHRIGVNVIDPNTYIIVSSVNS*
Ga0005232J37287_119028Ga0005232J37287_1190281F015413*GNRDMESHDLEKQVESLLATPQFEQPQFEQLLPRGIFGKDMLIGSAGTALSVQVGNIVGKFLPLGQLPVGTSSILAGILLQKFGGSNSMLKKLSEGIIQGGIATAMTPFTSGLIPSFNQEVKEVAQELNPLVKGVMW*
Ga0005232J37287_119970Ga0005232J37287_1199701F014384RDAKTQELANTDSKLAQDKEDLEDTRNSLSADQKFLMNLKETCQNTDQEWEERQKARQEEVVAVGEALAILSSDDAHDTFTSTFNFVQKSATESKRDQAAKVLFTAAKKYGNPKLAAIATSMRLDAFTKVKAAIDEMINALLKEKEDEIKHKDFCTDAINKNERAQELKARDISELEAKIADLTSN
Ga0005232J37287_120714Ga0005232J37287_1207141F058538YWIYSGRNMYSQYETTVINRRRLHDILNWVNQKYHLEYEVVQKNRDVFYVIFHDLNIKQTVAIQKQIKGIAQPEHFDMH*
Ga0005232J37287_136456Ga0005232J37287_1364561F103871VYNTVQIPGLILDYSKKKPPTKAVSCDLNALAGFIKRPQV
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