NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300002700

3300002700: Wastewater microbial communities from Syncrude, Ft. McMurray, Alberta - Biofilm from sections of failed pipe - PAS_821



Overview

Basic Information
IMG/M Taxon OID3300002700 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0047444 | Gp0091717 | Ga0024842
Sample NameWastewater microbial communities from Syncrude, Ft. McMurray, Alberta - Biofilm from sections of failed pipe - PAS_821
Sequencing StatusPermanent Draft
Sequencing CenterMcGill University
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size273059129
Sequencing Scaffolds5
Novel Protein Genes6
Associated Families5

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria4
All Organisms → cellular organisms → Bacteria → Proteobacteria1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHydrocarbon Resource Environments Microbial Communities From Canada And Usa
TypeEngineered
TaxonomyEngineered → Wastewater → Industrial Wastewater → Petrochemical → Unclassified → Hydrocarbon Resource Environments → Hydrocarbon Resource Environments Microbial Communities From Canada And Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationFort McMurray, Alberta, Canda
CoordinatesLat. (o)55.07Long. (o)-110.53Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036294Metagenome / Metatranscriptome170Y
F045540Metagenome152Y
F046465Metagenome151Y
F054974Metagenome139Y
F057187Metagenome136Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
draft_1401513All Organisms → cellular organisms → Bacteria827Open in IMG/M
draft_1430164All Organisms → cellular organisms → Bacteria1758Open in IMG/M
draft_1438283All Organisms → cellular organisms → Bacteria → Proteobacteria3239Open in IMG/M
draft_1439257All Organisms → cellular organisms → Bacteria3700Open in IMG/M
draft_1442058All Organisms → cellular organisms → Bacteria6821Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
draft_1401513draft_14015132F046465MKDWTDEPIDLDVWKRVPGNPFADYDPADGIALWSLWEMPSSSVGKIVRRGRPPGEPTAVRSIRLPVSTWKRLETEAEAAATSVNDLIRKRLG*
draft_1430164draft_14301641F045540ISDMFDENLDEIDFIKSLSELELIYGFEIPGELFDRTGMTLGEFADELSQLPVIPDNLYPEFFDIKFTSMKLPKRYIELENKTDVDSVQELEEINNQFELLTDRLNVLLGNILVN*
draft_1438283draft_14382834F036294VTVMDKGFSDEAIVGVKLVANEDAMTYLRIKLPESDKEVGAEGWNM*
draft_1439257draft_14392576F045540MSVISMGGNDMSKYIFTLATLLDSKSKIKKHYSPDTVISDLFDEDLDEIDFINSLSELELVYGFEIPEDLYDRTELTLAEFANELSQLPTIPDELFPEFFDIKFTSMKLTKRYIELETKTDEDSFSEMQIINEKFAELDDRLNIVLGNVLIN*
draft_1441660draft_14416604F057187MAENQERNDVTDLFTDESTVEWMEEHLSELKQSVSGPRLLYQSLVVGFVVGLAAHIGGYFLASSVPGGPLGLLVDLLLALGWSLWTGVVVAVFVEVIPEVKRRQIKRAVDAYEAMRLKQAQVAGMHGTAVLKKPHARRVEREQGQKRQRNRARKDG*
draft_1442058draft_14420582F054974MKRSQLNKSRFIVGIILVVIAVLMFLFVKEDYSTAGAIGIGILGLVSIAISRRK*
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