Sample 3300002753

Basic Information
IMG/M Taxon OID	3300002753 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0099541 \| Gp0056857 \| Ga0006238
Sample Name	Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - C0912_C27A4_35
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300002753 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0099541 | Gp0056857 | Ga0006238

Sample Name

Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - C0912_C27A4_35

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	29602760
Sequencing Scaffolds	35
Novel Protein Genes	38
Associated Families	36

Dataset Contents

Total Genome Size

29602760

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → Viruses → Predicted Viral	2
Not Available	17
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1
All Organisms → cellular organisms → Bacteria	7
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium TMED211	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium TMED228	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium TMED194	1
All Organisms → Viruses → environmental samples → uncultured Mediterranean phage	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia → Escherichia coli	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Bacteria → Proteobacteria

All Organisms → Viruses → Predicted Viral

Not Available

All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon

All Organisms → cellular organisms → Bacteria

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium TMED211

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium TMED228

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium TMED194

All Organisms → Viruses → environmental samples → uncultured Mediterranean phage

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia → Escherichia coli

Ecosystem Assignment (GOLD)
Name	Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Ecosystem Assignment (GOLD)

Name

Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Type

Environmental

Taxonomy

Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → intertidal zone → sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

marine biome → intertidal zone → sea water

Earth Microbiome Project Ontology (EMPO)

Free-living → Saline → Water (saline)

Location Information
Location	Monterey Bay, California, USA
Coordinates	Lat. (^o)	36.25	Long. (^o)	-122.2099	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

Monterey Bay, California, USA

Coordinates

Lat. (^o)

36.25

Long. (^o)

-122.2099

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F002125	Metagenome / Metatranscriptome	591	Y
F002593	Metagenome / Metatranscriptome	545	Y
F003769	Metagenome / Metatranscriptome	469	Y
F008029	Metagenome / Metatranscriptome	340	N
F009922	Metagenome	311	Y
F010275	Metagenome / Metatranscriptome	306	Y
F010650	Metagenome / Metatranscriptome	301	Y
F014789	Metagenome / Metatranscriptome	260	Y
F016155	Metagenome / Metatranscriptome	249	Y
F016811	Metagenome / Metatranscriptome	244	Y
F017320	Metagenome / Metatranscriptome	241	N
F019231	Metagenome / Metatranscriptome	231	N
F020519	Metagenome / Metatranscriptome	223	Y
F023489	Metagenome / Metatranscriptome	210	Y
F024091	Metagenome / Metatranscriptome	207	Y
F025308	Metagenome	202	N
F028183	Metagenome / Metatranscriptome	192	N
F034067	Metagenome / Metatranscriptome	175	Y
F038865	Metagenome / Metatranscriptome	165	Y
F041142	Metagenome	160	N
F045799	Metagenome / Metatranscriptome	152	N
F047902	Metagenome / Metatranscriptome	149	N
F053629	Metagenome / Metatranscriptome	141	Y
F058533	Metagenome / Metatranscriptome	135	Y
F067102	Metagenome / Metatranscriptome	126	Y
F069358	Metagenome / Metatranscriptome	124	N
F070883	Metagenome / Metatranscriptome	122	N
F071638	Metagenome / Metatranscriptome	122	Y
F073263	Metagenome / Metatranscriptome	120	N
F076078	Metagenome / Metatranscriptome	118	N
F078811	Metagenome / Metatranscriptome	116	N
F082707	Metagenome	113	N
F086155	Metagenome / Metatranscriptome	111	N
F092095	Metagenome / Metatranscriptome	107	Y
F092743	Metagenome	107	N
F094094	Metagenome	106	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
JGI24929J39151_1002253	All Organisms → cellular organisms → Bacteria → Proteobacteria	1339	Open in IMG/M
JGI24929J39151_1002828	All Organisms → Viruses → Predicted Viral	1177	Open in IMG/M
JGI24929J39151_1002853	Not Available	1171	Open in IMG/M
JGI24929J39151_1003502	All Organisms → Viruses → Predicted Viral	1053	Open in IMG/M
JGI24929J39151_1003655	Not Available	1029	Open in IMG/M
JGI24929J39151_1004576	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	907	Open in IMG/M
JGI24929J39151_1004581	All Organisms → cellular organisms → Bacteria	906	Open in IMG/M
JGI24929J39151_1004984	Not Available	864	Open in IMG/M
JGI24929J39151_1004993	Not Available	863	Open in IMG/M
JGI24929J39151_1005554	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium TMED211	817	Open in IMG/M
JGI24929J39151_1005940	Not Available	787	Open in IMG/M
JGI24929J39151_1006221	All Organisms → cellular organisms → Bacteria	768	Open in IMG/M
JGI24929J39151_1007231	Not Available	706	Open in IMG/M
JGI24929J39151_1008247	Not Available	660	Open in IMG/M
JGI24929J39151_1008251	Not Available	660	Open in IMG/M
JGI24929J39151_1009026	All Organisms → cellular organisms → Bacteria	629	Open in IMG/M
JGI24929J39151_1009117	Not Available	626	Open in IMG/M
JGI24929J39151_1009247	All Organisms → cellular organisms → Bacteria	622	Open in IMG/M
JGI24929J39151_1009640	Not Available	608	Open in IMG/M
JGI24929J39151_1009878	All Organisms → cellular organisms → Bacteria	600	Open in IMG/M
JGI24929J39151_1009962	Not Available	598	Open in IMG/M
JGI24929J39151_1010104	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium TMED211	593	Open in IMG/M
JGI24929J39151_1010221	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium	590	Open in IMG/M
JGI24929J39151_1010337	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium TMED228	586	Open in IMG/M
JGI24929J39151_1010437	All Organisms → cellular organisms → Bacteria	584	Open in IMG/M
JGI24929J39151_1010451	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium TMED194	583	Open in IMG/M
JGI24929J39151_1010722	All Organisms → cellular organisms → Bacteria	575	Open in IMG/M
JGI24929J39151_1011198	Not Available	562	Open in IMG/M
JGI24929J39151_1011673	Not Available	549	Open in IMG/M
JGI24929J39151_1011738	Not Available	547	Open in IMG/M
JGI24929J39151_1011809	All Organisms → Viruses → environmental samples → uncultured Mediterranean phage	545	Open in IMG/M
JGI24929J39151_1013146	Not Available	515	Open in IMG/M
JGI24929J39151_1013252	Not Available	513	Open in IMG/M
JGI24929J39151_1013752	Not Available	502	Open in IMG/M
JGI24929J39151_1013821	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia → Escherichia coli	501	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI24929J39151_1000071	JGI24929J39151_10000719	F020519	MPATSDIEVFNFEGNLEQSFYDFLLDNGIELATANDPKRLGDDYVGAQVSVSGLAEDEHMTEKPDGNLEYDHYNYTAEITIHTDRNENSVPGVAFSRYHRELVAKVRHLLSISRAAEVASLNDKIDYYWINRLVPSDATYNASDNSYDETVLTFEGDFSILTSAWPSA*
JGI24929J39151_1002253	JGI24929J39151_10022532	F025308	MISDDDFKFLLYESRGAFKILEIGTGTGKSTAALRLNNSEVYTIDKNDIFEYNGLNIHKFICTSKEYWEDWLHYDFDFVFIDGSIGKNDCEEILKRTKDSFKIVFHDYMPNEDKDPGKNKGWYNMKIFKETALLDYDIVEQLGGSHCGMXTLKKDK*
JGI24929J39151_1002828	JGI24929J39151_10028282	F058533	KVKLLEINNKDYGLYFDDLNNDGVTIGSTVQELNSEGIVEIKIDLKSSIYYRSVCGDDASDMDSNQNFQNGAFSEKELGFTPNIFTKNKDVGLRFAYLDKPIVDTNLKIPHIKLKGNDQSGQMITETERIYIDLGKQTFNGRLFPYNTAGWNLMFEDEDGDTTNTYDDIFADSEKILQSENPRIEFDMVVPTSELATLDFFLKTFSATIATSNGILVKSASGNVYNDYAYITIEGILQ*
JGI24929J39151_1002853	JGI24929J39151_10028531	F070883	METLEYLAYAGILFGMLVSAFTIDWKDKKTYRNSLIILTVIAAGTGFLFLIDF*
JGI24929J39151_1003006	JGI24929J39151_10030062	F067102	MDFKLEISRTNVANSYYDVDLFPKQQLEYDLDFYDSVDISKIKLPFYTKLRIPLTANNKSSNRFNFEPVTSATNQFPKDDFYFKITVYGSSNTEIAGILNVISFEYNSSESYIEVELKDYLSKYIAAIKDTKLGELYTDNYYTQRRTLNQFRANTASGGEAGIKNTNPDYTRPMSFPYIDFCNDVDGKFGYGARQFLEYGTGIDRTGIMPVFSVKGFLTYLASYISSTAFPLRVDSKLFELGAYASTPAFANFEAEKLHMVIPSQL
JGI24929J39151_1003502	JGI24929J39151_10035021	F002593	MSKLIYSKNGSQTTESIRNASPMIQAVWNQANKFGANIVRVRAYQDRFGNDTGKTFNSYHHEKVSVYKQKDEVHESNALYFAQKIPVTKSNKGMQILEVASNLDVQDTLDIIDEIQYYAETSFLGRLWNRIRYGTPMSITD*
JGI24929J39151_1003655	JGI24929J39151_10036552	F025308	MISDEDFKFLLHESNGYKKALEIGTGTGKSSAALKLNCEVYSIDRNDIIEYNIDINRFICESKDYWNDYLHYDFDFVFIDGSIGKGDCEEILKRTKDSFKIVFHDYIPGEKDKNTNKGYYNMKALKECAIEQYNIIEKLGGSHCAMLTLKKDK*
JGI24929J39151_1004576	JGI24929J39151_10045762	F003769	MQQLKTVTVKTSNKVESVHMQTLYKVIENCFNSLQIMEEDCTSASYFINSANIFAQLQMLYCENETNDYVSIESVMEVFSKNITFYDESCLFTNVVENTAMQNINIENYICMHN*
JGI24929J39151_1004581	JGI24929J39151_10045811	F082707	MWYHKKFKLQYDKNVFNEIIEYAERATWRQGYDQNGLLWNVEELPLNPKQFPILNELYEGLNTEFKRPSFFISNVKPGGLVNHIDHNKWGNL
JGI24929J39151_1004984	JGI24929J39151_10049842	F041142	MNYLATALIIILICLSTCXKAEADTAHINYVSSTSDQYTQLKSELEDLGYTVTGTNSGSVTLSDFSSKDLHINIAGDSNCGGSCKTAYETYIGNGGNVII
JGI24929J39151_1004993	JGI24929J39151_10049931	F078811	EIILENESGVLQHPQSDSWSTTIADWNTLRFTGTLNSNVDGETMRLSDINGTKSSQNHRINFAFPTEVTKSA*
JGI24929J39151_1005554	JGI24929J39151_10055541	F071638	MSKNIDTKKFNSNEKALRYIKELGFNLKDRHCFKEDRSFLYTKKFSKQQVYLRSTYDFLNDNTIEMGTVWT
JGI24929J39151_1005940	JGI24929J39151_10059402	F053629	MKMHCKNCGIKFYPSDNNYVGYPFGTYYNKAPSHMRVFHSRGCWEEWTAKNITAYTLWLQGMGNNDTTNATNNQSI*
JGI24929J39151_1006221	JGI24929J39151_10062212	F008029	MNLVGLKELSELLEVPYEKLKVWKSRGRLPEPFQTISGTPVWDWDVTEEEFRSIDINENSGRPRKPKISIAGGLIEIDVQGSSKDKDENISIRLNGKTFVDVKAEPANSKNKSDRNLSIKVLGKKVVD
JGI24929J39151_1007231	JGI24929J39151_10072311	F010650	MNNMNQFLRIANARLRKVYPNKMQRKAWAANMWRRYVERQ
JGI24929J39151_1008247	JGI24929J39151_10082473	F092095	MRVTNFIIGFILLTLTTLVTNSFASIGEVTIHNGSAVIDRQDGDKDIEVEKQL
JGI24929J39151_1008251	JGI24929J39151_10082511	F092743	MDEYLIDVLFNGKKEQLKTFSASPLEALDSMINFEDVEAVYKITRQTDKKNWSFDNKNLSSLRELRGLINNESAIMQEFRRAH*
JGI24929J39151_1009026	JGI24929J39151_10090262	F002125	LVGEASLTSVDLFVSKDTAKLMFLRKRRQPIIEVQKVNK*
JGI24929J39151_1009117	JGI24929J39151_10091171	F028183	HLENIDENNWYLFDCGHIRWTVQEAFNARRECKNYPFSEFHYELINLFTPAISFDTVLYTQTAIGGAPPHQDRNRPAALNFAIRGEFSDTSPQVFYDSFDRSTEKYRMTYEKNGLTKEFAPWIFKGPEIHGVENKTEKNRIIITCAWRHNSYEDIEKRLLDGTLVNWEQNEKNKRIKFI*
JGI24929J39151_1009247	JGI24929J39151_10092472	F076078	MRLKFETLLDVQDYYGSSDFQVEARYDKFDGEEYIMFRFGYWNELYYEDKFYAIFDKLGYKVEKQEIEDEDTGWNYSYNIKNK*
JGI24929J39151_1009640	JGI24929J39151_10096402	F017320	YFIHIEDGASKKLKVISIIPAIIIILKIVPKPGFCLINIHKKSTDTLIKKVAAPIDKLVVLDIPSASTDHGEFPVVDKIKRPSPNPKITKPXIKKKDVDNFGLKFKDLSELQDTIGIFLILRNIF*
JGI24929J39151_1009878	JGI24929J39151_10098781	F016155	MILECEYCYSRIVIKPDEPIKINFCPHCGEPTDDSEELDFNE*
JGI24929J39151_1009962	JGI24929J39151_10099622	F023489	HIFEEFVEQXTTISRCDCGANATKIVSATRHILDGASGDFPGRHMKWVREHENAG*
JGI24929J39151_1010104	JGI24929J39151_10101043	F009922	MENTFDINSFDKERTEAPASFPQCRALGYKFAKKGEVMNWKLQKQIQGCMYALAKDQRLTFKKAHQLLQGKTL
JGI24929J39151_1010221	JGI24929J39151_10102212	F024091	MNKIQTALKGYMDQIQELMESHPRAHLEENSNIHYLMSKASVYFAHMDDENRDYYQFVQTAIED
JGI24929J39151_1010337	JGI24929J39151_10103373	F069358	MEDHKIRALKDHYKAQITWAASELTSYLEYPSAVGEHTFLETMDKLVQQIAENEDKMVVL
JGI24929J39151_1010437	JGI24929J39151_10104371	F073263	REYRDTTEGGPGSGPQKGGKKFSSSEIKKAYGILNDPRYKQGNYTGAAKAINKLAPGLADHPDVKNAMKRAXENLDLPATGDTTTSNASQEVEQVEDLKEYTGMSISKSVNSNDVATALKNLKKGAKLYVQGKSQGGQRTMGDVISVSGDTVKIKPTASNGPTSVNVKDITMMDTLKEDLDEAKFTPAQISALQ
JGI24929J39151_1010451	JGI24929J39151_10104512	F038865	MAVDIVKLAPESFRTIYLRKEDRIILRTEQGRKIIIKRIIPSEWKPWRVYDQELADNNNKKEIFLVDNA
JGI24929J39151_1010722	JGI24929J39151_10107222	F002125	LVGEASLTSVDLFVSKDTAKLMFLRKRGQPIIEVQKVNK*
JGI24929J39151_1011198	JGI24929J39151_10111982	F010275	TIIENLRDNVHELWVLDSRPDLEDDCLQYCYENIHTPVPYAMIEFLSQHCSQAVSTQDLEHMAKGE*
JGI24929J39151_1011673	JGI24929J39151_10116731	F094094	MKDESDSNISNQTVVMPHIEDNIPLPKNAREALPEMSPDEELTMRAHTIKVISDIQDEAIEPSDDEMETAETIAKEMMKNPELKPEFGNYPNETIAYLAGLVNQTSHMVAKDLAEIKLSVLNGLLQEAAMAKSPRERISAWKAVGEIDG
JGI24929J39151_1011738	JGI24929J39151_10117381	F014789	MDTIKMLETLKKDYLGMGYQVEFDKYVLEGIAEGLTITEKMNFVSWDDACKWAATVTESLKVPFVILEMRG
JGI24929J39151_1011809	JGI24929J39151_10118091	F086155	MLNQLSFQKFKKTLVELKEDSPKETAEFKKLSPAERQAVKDVFTLLGNTKGEII
JGI24929J39151_1011892	JGI24929J39151_10118921	F047902	SNYFVAENGTSTTGVVGEIKDVNDKPITNKWNIRGDALVKRLQAMQKERPNLTILDMGCGVNEYKKHLNNVTGVDPYRKEADILCSQADFKPANDIKWDVIICFGPQNWYTYDEQYRNFMTLKNCLAPSGLLLWSHVHNYYKVFQPDHPHGHTWIHGDLEHAQKNSAFYFYDRNWKYTWY
JGI24929J39151_1013146	JGI24929J39151_10131461	F016811	MQNNEESDGQVIYDLGIRLTWKKKRGNGYTNMYFGTKDRPFQFVTRAKSIDHINRNPIMIAKMMSFVGATGKSVYDFHIIEEFYRKEISNSFSHKEEDYIKEFGE*
JGI24929J39151_1013252	JGI24929J39151_10132521	F019231	MTYKVNILRADNSPAEMHSFEKKPTYDEIKALLNHRVFDIVDGRYVDHNSGASVKVEIWCDDEGLMVNNPQRNHRASMLRWNHFKRMEKQLTDDWEDWAHIYGDAIFVFKENDRVKQNG*
JGI24929J39151_1013752	JGI24929J39151_10137522	F034067	KYKNIFTPAPIQRENPIKGNIYFFLGIIILQNGNKHKKTKPILNAPKKIGIIILQNGNKHKKTKPILNAPKKIGFIEEFNPNLPSG*
JGI24929J39151_1013821	JGI24929J39151_10138211	F045799	MKNLFLVLSFILISVSTYSQNDFSGWWQSKTSKYITMIYAGSYGVSAVVNYSPSTDNTIHEEIIKRNKKTFVTRLFNPANGYFVKVKYKLKDKNNLICKFSGDLNKTIHLTRYEVNLKDKLKK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300002753: Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - C0912_C27A4_35

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences