NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300002876

3300002876: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI073_120m_B (Metagenome Metatranscriptome)



Overview

Basic Information
IMG/M Taxon OID3300002876 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0046785 | Gp0055354 | Ga0005243
Sample NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI073_120m_B (Metagenome Metatranscriptome)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size25140937
Sequencing Scaffolds8
Novel Protein Genes9
Associated Families9

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available7
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMarine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → coastal inlet → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationBritish Columbia, Canada
CoordinatesLat. (o)48.7299Long. (o)-123.5699Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006550Metagenome / Metatranscriptome370N
F012282Metagenome / Metatranscriptome282Y
F016399Metagenome / Metatranscriptome247Y
F042625Metagenome / Metatranscriptome158Y
F066454Metagenome / Metatranscriptome126N
F066733Metagenome / Metatranscriptome126N
F067819Metagenome / Metatranscriptome125N
F081198Metagenome / Metatranscriptome114N
F102081Metagenome / Metatranscriptome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0005243J43192_105806Not Available678Open in IMG/M
Ga0005243J43192_106315Not Available1010Open in IMG/M
Ga0005243J43192_106592Not Available510Open in IMG/M
Ga0005243J43192_107376Not Available1199Open in IMG/M
Ga0005243J43192_108100Not Available714Open in IMG/M
Ga0005243J43192_108798Not Available1118Open in IMG/M
Ga0005243J43192_112463Not Available884Open in IMG/M
Ga0005243J43192_117440All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium635Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0005243J43192_105806Ga0005243J43192_1058061F016399RRSSIRRVARRGSKGIGSSLKTGIIGDVVKGIGAGSLVSLVMSRVAPNSSITPIASTGAAFLTGGIVGGAANLILSGGLGQLGGIFGGATTPQQEFGV*
Ga0005243J43192_106315Ga0005243J43192_1063153F042625MTSKEERDQLWKDLKASWAVLKRDSGADEVAKGKAKEKINEIQDALKLDKTDWNQPRSGPPGSHLTKAGASPNPSNNALVEKILGTVLDMKRELNEDLVKINQKL
Ga0005243J43192_106592Ga0005243J43192_1065921F066733YEDFVATDMLDTISAEGTLTPGLWIRGDTGATITSSDVASMALDETGIAVGREYLENQGYLRGGIKPICFLDPQQWRELITSSNVTSLATRSAPDIWLKAELEQFMGVQLIVTNAVEHKNNTTNNAVNAYMCVPKHSYGIGIKRDVTVKMHEVGEDNQVRVNTTWRTKAG
Ga0005243J43192_107376Ga0005243J43192_1073761F006550MAKVFNTKKADYNGMQLWLNPVDKTVYASPSAPTYGFTESGAYPIYDYKAHQSGMKTAKDTFGNDSYVHDAFVDAEFKALAEDYVSDVKAGGRQRMAALRSNTNSAVDIVNVWETVLGKQDRTYAGKNLAKEIAVPNLLISIDTATKFSGMTQLDEGQLSQLKELTYTRQNFEASKYGLKFVIHEEARLKNVHNVLQDSIQVASNKVEQRQSFDVVSLADSSLTAKAAAGAWDTFVSSTDRSTANPLLDLGTSQLLIEGSGVGGKLNRIGMHPLDFAKYMGNTFIRGVASTSPSEVSFEPGTRELPGFPGAGLVLDNAIRQGDVYCVDTEKEPTIALFQGPQRIGSAHDEETGDDKYFIIDYHLASVIQSETGRQITGCTTPTDW
Ga0005243J43192_108100Ga0005243J43192_1081002F067819MESLMVAWGSSQAWWGTACSIVVIANALTMAMKDEYAEKLPILGKIWPIMNWLALNVH
Ga0005243J43192_108798Ga0005243J43192_1087981F081198IPTDVKSEKVEEKVKVTIETDGEVEVGKAEATKTEASDDEKCPEGKKMVAGKCVDAKQESTPESSDLVKATEALTSVIENVGKAWEPKSQVAESTESNGFVEEAFTDVDAKQFMDKLFETGYNKLVMDKEGWIEEHTVPGAADVAGNVTEAVSTSGTISGVKQRSNISIQLGSKTATPLRQYGQFEAIPTGQNTARFYRITNPDAGAITESPTTDITAVTHTLTAIDVTCSIRGWRQVVEKANLEDYPASFLNALRETARLEAIRDEHKLILQDLGATDHDFGGVSTAPYHIGGSDGVATTTTTEEDADGAMDEDGITKAKMYLGKLGNSTAPGQLIAFLSEEAFEALISSTGLSEYTQIGNANVTRLGQLE
Ga0005243J43192_112463Ga0005243J43192_1124631F102081MTSWDVITPTSIGTGVAKTSLGTITKPEEVQSLIEFVPYYAPSGAVTAGESMLLETALESNSVNLLPKRIINPVIQAGLGATFATMIPMLEAWNCNTPLTAGATPQIQAFGQAQIANTVAPSMGVAFHWSNSRPNSPEMFYNKPDNETSTGTAATIVAGNSVTINDGKTLQAVYGAVSMGTVTASNSLLASMQFNSNDFDNSQAIEVPIQPNSVGLGGLTSALNVKGSYYKNVNMGMKQTATISTVLRVSEALAAAGNFIG
Ga0005243J43192_115162Ga0005243J43192_1151622F066454MSIRLDVLILINSGVTDRSEIMERLGINIMSVSNCFRFLIKEGWVEYSREPVSAVGSVGYRITQVGIDKIKASTVDEYRQSPQRKIPAYEVMRSHLGVGGD
Ga0005243J43192_117440Ga0005243J43192_1174401F012282KFSRYWNGGTSATDIKFFVITDPSQTYYIQCSLTLSAAEAAIAKNYTVTVSSTASSGSTVTGQSSYYLMASSGAETELAARVVGRAQYPDEGNNDAYPIVEVWLNTHRDRYVTATASTA*
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