NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300002931

3300002931: Ant worker gut metagenome for colony PL010



Overview

Basic Information
IMG/M Taxon OID3300002931 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0085494 | Gp0095983 | Ga0052915
Sample NameAnt worker gut metagenome for colony PL010
Sequencing StatusPermanent Draft
Sequencing CenterHarvard University
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size396700087
Sequencing Scaffolds2
Novel Protein Genes21
Associated Families2

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameCephalotes Varians Microbial Communities From The Florida Keys, Usa
TypeHost-Associated
TaxonomyHost-Associated → Arthropoda → Digestive System → Gut → Unclassified → Cephalotes Varians → Cephalotes Varians Microbial Communities From The Florida Keys, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal proximal gut

Location Information
LocationUSA: North Key Largo, Florida
CoordinatesLat. (o)25.2845833Long. (o)-80.3122167Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F054614Metagenome / Metatranscriptome139Y
F059647Metagenome133Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
CVPL010W_10058149Not Available823Open in IMG/M
CVPL010W_10082131Not Available543Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
CVPL010W_10015542CVPL010W_1001554214F054614LTFTLTGKSSILAVNYFSAVDLSDYELGLTDIETYYTIPNVNSSNNKFYFNKDDKEIVIPEGSYELHMI*
CVPL010W_10017264CVPL010W_100172644F054614MLLTLFTLTGKNSILAVSYFSAVDLSNGDYELGLTDFETYYTIPNVNLSNNKFYFDKDNKGIVISEGSYKLHDIDKYLKRAISNNIM*
CVPL010W_10021619CVPL010W_100216192F054614MSLTITLTSKSGILAVSYFPAVDLSDADYILDLTGFETYYTIPNVNSSNNKFYFDKDDKEIIIPEGSYELHDRQESETCK*
CVPL010W_10024610CVPL010W_100246108F054614LNSVSNMSLTFTLTGKSSILAVSYFPAVDLSDDDYELGLTDFETYTIPNVNSSNNKFYFDKDDKEIVIPVGSYELHKI*
CVPL010W_10037129CVPL010W_100371291F054614MSLILTLTEKSNVLATTYFSAIDLSDDDCELDIMTFETYNIISNVNASNNKFYFGENDVKITIPGII*
CVPL010W_10037703CVPL010W_100377031F054614MSLTFTLTGKSSILAVSYFPAVYLSDDDYVLGLTDFETYYMIPNVNSSNNKFYFDKDDKEIVPEGSYELHMI*
CVPL010W_10037967CVPL010W_100379671F054614MSLILTLTGKSNVLATTYFPAIDLSDDDYKLGLMNFETYNAISNVNASNNKFYFDENDMEITIPKGSNCMP*
CVPL010W_10043335CVPL010W_100433351F054614MSLILTLTGKSNVLVTTYFPAIDLSDDDYKLGLMNFETYNTISNVNASNNKFYFDENDMEIMIPKGSNCMP*
CVPL010W_10047488CVPL010W_100474884F054614MSLILTLSGKSNVLATTYFPAIDLSDDDYELDLMNFETYNTISNVNASNNKFHFDENDVEITIPEGSYELHAINDFLKHTIPRKCS*
CVPL010W_10058149CVPL010W_100581492F059647MLYNMASTGPVCPVVGNVGLLRSRISSLNELVHFKAELRDPGLVYQVVACTAL*
CVPL010W_10065081CVPL010W_100650812F054614MSLILTPLTGKSNVLSTTYFPAIDLSDDEYEFGLMNFETYNTIPNVNASNNKLYFDEDDVEITIPEGWYELGAINEFLKHAITRKR*
CVPL010W_10065671CVPL010W_100656712F054614MLLILTLTGKSNVLVTTYFPAIDLSDDDYELGLMNFETYNTISNVNASINKFYYDENDVEITIPKGSYELHAINDFLKHAI
CVPL010W_10067479CVPL010W_100674792F054614MSLTFTLTGKSSILAVSYFLAVDLSDGDYELGLTDFETYYTIHNVNSSYNKFYFDKDDEQIVIPEGSYELHDIYIDKYLKRTISNDKKEDTSQR*
CVPL010W_10072406CVPL010W_100724062F054614MSLILTLTGKSNVLATTYFPAIYLNDDDYELGLMNFETYNTNVNASNNKFYFDENDVEITLPEGS*
CVPL010W_10074111CVPL010W_100741111F054614MLPLTLTGKSNVLAVNYSPAIDLSDGDYELGLMLFETYYTISNVNASNNKFYFGKDDSKITIPEGSYELLAINEFLKTRNFAETIVTQ*
CVPL010W_10078024CVPL010W_100780241F054614MLTLTLTGKSSVLAVNYPSAIDLSDGNYELGLMLFETYHTISNVNALNNKFYFGKDDAKITIPEGSYELQAINEFLKRA
CVPL010W_10080779CVPL010W_100807791F054614MSLTFTLIGKSSILAVRYFPAVDLSDGDYELGLTNSETYYTIPNVNSSNNKFYFDKDDKEIVIPEGSYELHDIN
CVPL010W_10081278CVPL010W_100812782F054614MSLILTLTEKSNVLATTYFPAIDLSDDDYELGLMNFETYNTSNVNASNNKFYYDENDVEITIPEGNRTNCMP*
CVPL010W_10082131CVPL010W_100821311F059647MASTGPV*PVVVNGGQLWSRIPSLNELVHFKAELRDLGLVYQVIASTAL*DKIGQISSK
CVPL010W_10082872CVPL010W_100828722F054614MSLILTLTGKSNVLATTYFLAIDLSDDDYELGLMNFETYNTMSNVNASNNKFYFNENDMEITIPEGSYELHAINDFLKHAIPRKRSQHAVH
CVPL010W_10085567CVPL010W_100855671F054614MSLILTLIGKSNVLTTTYFPAIDLSDDDYELGLMNFETYNTISNVNASNNKFYFDENDMEITIPDGSYELHAINDFLKHAIPRKRSQHAVHDKKRGIV
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Biomedical Sciences Research Center "Alexander Fleming"
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