NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300003118

3300003118: Human gut microbiome from lean and obese individuals in Granada, Spain - Obese sample



Overview

Basic Information
IMG/M Taxon OID3300003118 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0111467 | Gp0097812 | Ga0052233
Sample NameHuman gut microbiome from lean and obese individuals in Granada, Spain - Obese sample
Sequencing StatusPermanent Draft
Sequencing CenterInstitute of Catalysis, The Higher Council for Scientific Research (CSIC)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size10731170
Sequencing Scaffolds5
Novel Protein Genes5
Associated Families5

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Bacillus → Bacillus subtilis group → Bacillus atrophaeus1
Not Available1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Gut Microbial Communities From Lean And Obese Individuals In Granada, Spain
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Gut → Human Gut Microbial Communities From Lean And Obese Individuals In Granada, Spain

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationGranada, Spain
CoordinatesLat. (o)37.17Long. (o)-3.59Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013656Metagenome269Y
F039198Metagenome164Y
F067844Metagenome125N
F074964Metagenome119N
F082887Metagenome / Metatranscriptome113Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0052233_100205All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Bacillus → Bacillus subtilis group → Bacillus atrophaeus2176Open in IMG/M
Ga0052233_100375Not Available569Open in IMG/M
Ga0052233_107483All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1327Open in IMG/M
Ga0052233_107562All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium1470Open in IMG/M
Ga0052233_110406All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales795Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0052233_100205Ga0052233_1002053F074964MITKKNVNKLQNAVIKENASNLVGAVKLYNALFANGADLKAVCKALEIPAEYAVKVAALAKDKKRLVAVCSQMLPKVGDTFIKFSLYSKVYKDSKVDKEKGIEAKTADWCADNVVYGEEYKPFGFATAETLETKSSAKWIVKETDEYKSTYVAVKIKSYSLRTVAKCVSEYLAHESNQQ*
Ga0052233_100375Ga0052233_1003752F082887MEKLKKIAKYTTNILAIISALIAGINAVDGITIPYAIQIVQIIAVVQGVIGTYLLGQKVVTNKEDK*
Ga0052233_107483Ga0052233_1074831F067844MNTLAAETASAWYLILNRKRPTKKVIASYFNMTQFSSHLPRNPDAGNKQVSAGAVVITPQHRFTRAPQGSPKSLGGREEV
Ga0052233_107562Ga0052233_1075623F013656MSKTYKEPNKSETETTINVLYSEKMISIYTNKVGLQKQLNKLIGEPTKEYKFKRSIVGSMWEIPLDDKIRISRLVLKANIFEL*
Ga0052233_110406Ga0052233_1104061F039198MQITNTEIQGTKYVQIYLTEEELQKKETKDLVKKYKQEKYSVAIFVSGKENYPEILEKIITKQVGLNRNVC*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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