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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300003129 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0056599 | Gp0097438 | Ga0052190 |
| Sample Name | Olavius algarvensis microbial community from off the coast of Capo di Sant Andrea, Elba, Italy |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI), Max Planck Institute |
| Published? | Y |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 23735628 |
| Sequencing Scaffolds | 9 |
| Novel Protein Genes | 15 |
| Associated Families | 8 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Parasitiformes → Ixodida → Ixodoidea → Ixodidae → Ixodinae → Ixodes → Ixodes scapularis | 1 |
| All Organisms → cellular organisms → Eukaryota → Opisthokonta | 1 |
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Lophotrochozoa → Mollusca → Bivalvia → Autobranchia → Pteriomorphia → Mytiloida → Mytiloidea → Mytilidae → Mytilinae → Mytilus | 2 |
| Not Available | 4 |
| All Organisms → cellular organisms → Eukaryota | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Olavius Algarvensis Microbial Communities From Capo Di Sant'Andrea Bay, Elba, Italy |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Annelida → Integument → Unclassified → Unclassified → Olavius Algarvensis → Olavius Algarvensis Microbial Communities From Capo Di Sant'Andrea Bay, Elba, Italy |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal surface |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Bay off Capo di Sant'Andrea, Elba, Italy | |||||||
| Coordinates | Lat. (o) | 42.807222 | Long. (o) | 10.141111 | Alt. (m) | N/A | Depth (m) | 5.6 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000089 | Metagenome | 2423 | Y |
| F011565 | Metagenome | 289 | Y |
| F023238 | Metagenome | 211 | Y |
| F023283 | Metagenome | 210 | Y |
| F088370 | Metagenome | 109 | N |
| F094501 | Metagenome | 106 | N |
| F099954 | Metagenome | 103 | N |
| F106038 | Metagenome | 100 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0052190_102189 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Parasitiformes → Ixodida → Ixodoidea → Ixodidae → Ixodinae → Ixodes → Ixodes scapularis | 6208 | Open in IMG/M |
| Ga0052190_102581 | All Organisms → cellular organisms → Eukaryota → Opisthokonta | 1729 | Open in IMG/M |
| Ga0052190_102582 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Lophotrochozoa → Mollusca → Bivalvia → Autobranchia → Pteriomorphia → Mytiloida → Mytiloidea → Mytilidae → Mytilinae → Mytilus | 8612 | Open in IMG/M |
| Ga0052190_102583 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Lophotrochozoa → Mollusca → Bivalvia → Autobranchia → Pteriomorphia → Mytiloida → Mytiloidea → Mytilidae → Mytilinae → Mytilus | 3222 | Open in IMG/M |
| Ga0052190_104530 | Not Available | 2373 | Open in IMG/M |
| Ga0052190_104855 | Not Available | 1498 | Open in IMG/M |
| Ga0052190_104868 | All Organisms → cellular organisms → Eukaryota | 1476 | Open in IMG/M |
| Ga0052190_105315 | Not Available | 1083 | Open in IMG/M |
| Ga0052190_105334 | Not Available | 1076 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0052190_102189 | Ga0052190_1021895 | F106038 | VYGTTANVAGAAIRNFLIGSSLSNRIESGRPIRIRIESGSFAGPYQKATHAACEPVFLAVTEI* |
| Ga0052190_102581 | Ga0052190_1025812 | F088370 | MALPDESLVEDVWFAMWEVQTHARREKVPGPCRNFGKLANSCFEQWLTKPDVLRLYAEKVLADPFDPRETTRQLQHLHSCYATDTARACIRLISLLEKVSSK* |
| Ga0052190_102581 | Ga0052190_1025813 | F023283 | MMVGGAVVNALAFTGGNYLFSSLGRSGEAEKERKRHDMAIEELQRAESEYQHKRRLRLDYLNQQLWAEQHSAQVFEDVDAAAREYWLVTGGDQEKLGKAPDAGAEPTLSEYYEPSASQKEYELLFITGGLALTGWAAFKFL* |
| Ga0052190_102581 | Ga0052190_1025814 | F011565 | MSTPKDLGNLLYHSAVIGGLSVGYTMIGKKLFKMKPADLGRLDLEDSTKLVGTVALSLWTQDMLVKQGILPANIIKTT* |
| Ga0052190_102581 | Ga0052190_1025815 | F099954 | KTLTMDCEAQSLPTPTVVVPSATTMQAALVRQQKDPKKQEAGRRGAEARRKKMEALKAELIAAKETVSETIPKEHAEQHVKPVVEQRVWERSEGIPGWIMGISLAVIIGAVLYTRRSAPLERRQPHGPQERNTVVTTQSAAVQPSRALFDM* |
| Ga0052190_102582 | Ga0052190_1025821 | F011565 | MSTTPPYAKDLGNLLYHSAVVGGLTVGYSMVGKRLLKMKPADLGRLDLEDSTKLVGTVALSLWTQDMLVKQGILPANIIKTT* |
| Ga0052190_102582 | Ga0052190_1025822 | F099954 | MQAALVRQQKDPKKQEAGRRGAEARRKKMEALKAELVAAKEIVSETVPKEHAEQHVKPVVEQRVSERSEGTPGWIMGISLAVIIGAVLYTRRSASSERRQPHIVQHEPQERNTVVTTQSAAVQPSRSLFDM* |
| Ga0052190_102583 | Ga0052190_1025831 | F011565 | MSTPKDLGNLLYHSAVVGGLTVGYSMVGKKLLKMKPADLGRLDLEDSTKLVGTVALSLWTQDMLVKQGILPANIIKAT* |
| Ga0052190_102583 | Ga0052190_1025832 | F099954 | MQAAPVRQQKDPKKQEAGRRGAEARRKKMEALKAELIAAKETVSETVPKEHAEQHVKPVVEQRVWERSEGTSGWIMGIGLATIIGAVMYSRLSAPLERRQPHGPQERNTVVTAQSAAVQPSRALFDM* |
| Ga0052190_104530 | Ga0052190_1045304 | F106038 | VSVVYGTTANVAGAAIRNFRIGPSLSNRIESGRPIRIRIESGSFACPDQKATYAACKPLFLAVTEI* |
| Ga0052190_104855 | Ga0052190_1048551 | F094501 | MQVFDVPLPEVPILQDDIRDAANHTPNCTGTMPVRRRLRCRDDRAVYYAVHDLYTNMTRQVVKMLEHLHDLLPTEKNIGTAGISKRALAPFVGWVMRGLFGTATEDELLPIETQIRRIAQGVVMMSEGLEVQNNRLVGFMSMAVDDIDNIINMTIYQEEEIRQLRELFVEQLSKLPILQALTTVLARKVEEYVSVTRD |
| Ga0052190_104868 | Ga0052190_1048682 | F088370 | MALPDESLVKDVWFAMWGVQTHARREKVPGPCRNFGKLANSCFEHWLTKPDVLRLYAEKVLAAPFDPRETSQQLQRLLHFDTARACIRLISLLEKARSK* |
| Ga0052190_104868 | Ga0052190_1048683 | F023283 | LGRSGEAEKERKRHDLAIEELQRAASEYQHKRQLRLDYLNQQLRAEQHSAQVFEDVDAAAREYWLVTGGDQEKLDKAPGAGAVPTLNEYYEPSATQKGYELLFMAGGLALSGWAAFKFL* |
| Ga0052190_105315 | Ga0052190_1053151 | F000089 | MWVRGHSRSLKLVPFESLDAVSYSPSIVTVAVSVAVCEIFSVKEWRDLENQVRGRSRSLKMAPFDRPYATF* |
| Ga0052190_105334 | Ga0052190_1053342 | F023238 | MDRNQDVEVELYEENVGNLNYSTPNESRSSSPDRFLPVLSSQEPTQRRLEEIPFVAIDPRPDPEELSHAQTSQVPRIHDSCHSGARTWVADEDFTSCHKSRER |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |