Sample 3300003214

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300003214

3300003214: Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL

Overview

Basic Information
IMG/M Taxon OID	3300003214 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0053073 \| Gp0061152 \| Ga0007032
Sample Name	Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	183666840
Sequencing Scaffolds	2
Novel Protein Genes	3
Associated Families	3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Arabidopsis, Maize, Boechera And Miscanthus Rhizosphere Microbial Communities From Different Us Locations
Type	Host-Associated
Taxonomy	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere → Arabidopsis, Maize, Boechera And Miscanthus Rhizosphere Microbial Communities From Different Us Locations

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere

Location Information
Location	University of North Carolina, USA
Coordinates	Lat. (^o)	35.9082	Long. (^o)	-79.0499	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F016724	Metagenome / Metatranscriptome	245	Y
F039839	Metagenome / Metatranscriptome	163	Y
F059118	Metagenome	134	N

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
JGI25165J46597_1000023	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	338873	Open in IMG/M
JGI25165J46597_1031803	Not Available	680	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI25165J46597_1000023	JGI25165J46597_100002332	F059118	MMGGILDNPPVHDPLVPPMRVTTSFTCHGTARTITVARGIGRDAVVALTTNGKPVVGAAMTTIRSGLAPLTAIDEVTPYCGDGPDRIRIKGWIDDRKRNLMIFFGPAGEAAVRDVG*
JGI25165J46597_1031803	JGI25165J46597_10318031	F039839	MIALTRGENFARRIIPVGSRPALRRETRFGLPLTPESGGPSRHRAAQFAPAMI
JGI25165J46597_1036499	JGI25165J46597_10364991	F016724	MRAKQSILGLVYPGGEVRRPPLVGMQFLHERTVGASNLVAPRARLQAKDLIGLLFRHFSARR

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