NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300003270

3300003270: Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_17_M020



Overview

Basic Information
IMG/M Taxon OID3300003270 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0099541 | Gp0089019 | Ga0008462
Sample NameAmmonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_17_M020
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size83719072
Sequencing Scaffolds20
Novel Protein Genes23
Associated Families21

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria1
Not Available8
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Nostocaceae → Nostoc → unclassified Nostoc → Nostoc sp. PCC 71071
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → SAR86 cluster1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae1
All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → environmental samples → uncultured marine thaumarchaeote AD1000_06_F061
All Organisms → cellular organisms → Archaea1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter1
All Organisms → cellular organisms → Eukaryota1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMarine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → intertidal zone → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationMonterey Bay, California, USA
CoordinatesLat. (o)36.25Long. (o)-122.2099Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000711Metagenome / Metatranscriptome925Y
F002047Metagenome / Metatranscriptome599Y
F008050Metagenome340Y
F008361Metagenome / Metatranscriptome334Y
F015024Metagenome / Metatranscriptome258N
F015265Metagenome / Metatranscriptome256Y
F023366Metagenome / Metatranscriptome210N
F035723Metagenome171Y
F035977Metagenome171Y
F042146Metagenome / Metatranscriptome158Y
F045150Metagenome / Metatranscriptome153N
F046416Metagenome / Metatranscriptome151Y
F063080Metagenome / Metatranscriptome130N
F073088Metagenome120N
F085780Metagenome / Metatranscriptome111Y
F087322Metagenome110Y
F090410Metagenome / Metatranscriptome108Y
F093941Metagenome / Metatranscriptome106N
F097392Metagenome / Metatranscriptome104N
F098669Metagenome / Metatranscriptome103N
F100378Metagenome / Metatranscriptome102Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
JGI26113J46593_1004170All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria1920Open in IMG/M
JGI26113J46593_1009216Not Available1169Open in IMG/M
JGI26113J46593_1009914All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium1122Open in IMG/M
JGI26113J46593_1015463Not Available867Open in IMG/M
JGI26113J46593_1016394Not Available837Open in IMG/M
JGI26113J46593_1018135Not Available790Open in IMG/M
JGI26113J46593_1018882Not Available773Open in IMG/M
JGI26113J46593_1020374All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Nostocaceae → Nostoc → unclassified Nostoc → Nostoc sp. PCC 7107739Open in IMG/M
JGI26113J46593_1021213Not Available722Open in IMG/M
JGI26113J46593_1021351Not Available719Open in IMG/M
JGI26113J46593_1022254All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → SAR86 cluster702Open in IMG/M
JGI26113J46593_1022934All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae689Open in IMG/M
JGI26113J46593_1026419Not Available635Open in IMG/M
JGI26113J46593_1028111All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium613Open in IMG/M
JGI26113J46593_1031496All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium574Open in IMG/M
JGI26113J46593_1034332All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → environmental samples → uncultured marine thaumarchaeote AD1000_06_F06547Open in IMG/M
JGI26113J46593_1034803All Organisms → cellular organisms → Archaea542Open in IMG/M
JGI26113J46593_1037228All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.522Open in IMG/M
JGI26113J46593_1038291All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter513Open in IMG/M
JGI26113J46593_1039931All Organisms → cellular organisms → Eukaryota501Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
JGI26113J46593_1004170JGI26113J46593_10041701F008361VAVELNEATKELEKATSAIEKAETSKARLDASVELKKATARLEGINYLS*
JGI26113J46593_1009216JGI26113J46593_10092162F000711METINEPNHPTDYRLVKLMDGSILMGTISVDEQHMRIENPLELTTIPRMTEFGLKEDTTLAKWIPFTSDKEFVITKDKVVVISLATVELAHFYEVVLNKIQTDTLHTRPPLTPEDIDRILSLAE
JGI26113J46593_1009914JGI26113J46593_10099141F008050VFSRKTLELLLTNYININNGLRTPCAEKSKFEKLIKETEALLKSKPLDVIYPDGMTALEYAHKLAKEANDRMHMS*
JGI26113J46593_1013579JGI26113J46593_10135792F097392MPDIMLLGVEKEVLSLGIEENPADNFPCMPSEGIDSEMRVLLYALLMGIFFDEAQSMEQLVLEYGPEGPWVFKLDFTITERLAEVEEDDIDDIALNWSQTGEMSALNMEASDLQEVLARFLFNLVHFCMLVRQEQVLSVFIYSE*
JGI26113J46593_1015463JGI26113J46593_10154632F023366ANVSIEQTSSGTVHIDAAGSAFTADIDQDNASTLSLHHDGASADYVILQTGGSGDILTLTVNGASANVDIIQRD*
JGI26113J46593_1016394JGI26113J46593_10163941F063080VIKIGFEKLIAVAWASGIRVKQVKPASIPIAPKKPLIKNNFVLFIFIAARPVECNIGSITIKAKRFLKKTTSRMCKFSDAFLIKITIIEKQTIDFSDAFLIKITIIEKQTIDKIFKMIALVCEFCNLKNRIILTIMVSFPPMHS*
JGI26113J46593_1018135JGI26113J46593_10181352F063080PIVIKIGFEKLIAVAWASGIRVKQVKPASIPIAPKKPLIKNNFVLFIFIAARPVECNIGSITIKAKRFLKKTTSRMCKFSDAFLIKITIIEKQTIDKIFKMIALVCEFCNLKNRIILTIMVSFPPMHS*
JGI26113J46593_1018882JGI26113J46593_10188821F098669METATRGRKQKWRLKEAEGLGRKRRIGEAEGREPHESDQGLDSGPGLNPGRKVRRIDQAMEGSPEIVPAKIRKK
JGI26113J46593_1020374JGI26113J46593_10203741F093941LFLFLVACNSSDDSYSGIAWDEEVDGELSGDLLSPSFVSLQVGDNRIIGSSTPAEGAMCTTFEGGPPVPIIPYFPNHESYVDVFSFNLSENERLVSITVESLDVSPFHNFEDFPCIGSFEEQNGAFVAINNSDKIDWNSDNVINFISLPVTYPLIGIGFAKSVNENILNSFRQDFPLPGYEGVNNENLDISNGTYTFWWKEGANNADYTLNFVVEKIN*
JGI26113J46593_1021213JGI26113J46593_10212132F035977MESALASLQIIWDNFKNYNMTDLQQSIYDLKLLQYGAMKTLTPGVQAMIYTLSCVESEEQILQKYCDIHGTCYMVTGKSGDVYSRARPEWXQLKXARMRKQAIIAHLERWAGDGVEGEDELKEFLQ*
JGI26113J46593_1021351JGI26113J46593_10213511F046416MNMEYLAVALLSCLVGACGMNQKHEAIQGEMPFVQGTPTKELLQDMPELINTPTDGEGNP
JGI26113J46593_1022254JGI26113J46593_10222541F015024MDYTEYYELFKQYPECEVEHENHKEGFDGKRNFDLEKAIIKLVAEDETLFLYQERTFNFSMLLLNKQYADLDFWVCTTHALHDISEHKQGLLDDGDYRLYFEGAEGPIEEEEQGYLCDLPLNVRNGHFNIEEFEQILDEIMTFEGAMEDTYYIEELIDNGRTYTEDGETFKVLDCSHN
JGI26113J46593_1022934JGI26113J46593_10229343F015265HMTKNPKLIETNAIVNLNNVGLPVFLNPIYAIIPMASPTKNPTRFSIFSNKNSNGV*
JGI26113J46593_1026419JGI26113J46593_10264192F085780MRSKLKSLKIVQVLPNGCVHFDHLVYLKTYTRYNFSKKSLFFSLLDKKKLFFENSNFFYKKYRNQSVNNLINEFKTDYRKY*
JGI26113J46593_1028111JGI26113J46593_10281111F002047GQYTMTDKAKAICATLDSYFIKAKKKTDIQLMGKDFVERINSYREVFPAKKLPSGKPARNNVKALGEAFRWFFETYDHTWDEVQKATKMYVNEYRDAEYMYMQTSQYFICKQDKHRVKHSTLADYCDMIVEGVSTEQDHFKENVV*
JGI26113J46593_1028111JGI26113J46593_10281112F090410MGKPTPAWVGQYTAFNDALKYMYARSTGEEKSIYTPWPKFNDAATDGLEWNT
JGI26113J46593_1031496JGI26113J46593_10314962F035723MALVTNKTEETNHLRGKSRFYVAGWVANRECENPQALPESCKGDIVVEKWHEEYLSGYGDSFANGECLSPPVED*
JGI26113J46593_1034332JGI26113J46593_10343321F073088PIQEEVQVNQQMHLIQIQFDQFVFLNNTYYLKPEFQSTQKNVIENELNIFIDFKEIGTIVGVKIIKYRKIEEIHKI*
JGI26113J46593_1034803JGI26113J46593_10348032F087322VDLQALLLGLVLTLLLVFRIIQAGTAEACFVFFSRRIFLGEDLRAAIDVQARKALFK*
JGI26113J46593_1037228JGI26113J46593_10372281F045150MGIKYISGFRGADHAKQHLRRSVHLGSALTSGYTVLNPAEA
JGI26113J46593_1038291JGI26113J46593_10382911F042146LKENQVLQKKIIQNHLALQIIQNILEENLQKTHLQTQRKKALVLRERKNLRVEIVDLKTLALKNIVKKELNLKIF*
JGI26113J46593_1039931JGI26113J46593_10399311F100378MSDAYAIVDIPKSLPIHGMALTSTGRKIEHNKVVVDTQTYESNGSVSLKKSGFSCL*
JGI26113J46593_1039931JGI26113J46593_10399312F100378VDIPKSLPIHGMALTSTGRKIEHNKVVVDTQTYESNGSVSLKKSGFSCL*
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