NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300003279

3300003279: Down-flow hanging sponge reactor microbial communities from the University of Illinois at Urbana-Champaign, USA - U3-798FC-DHS



Overview

Basic Information
IMG/M Taxon OID3300003279 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0111456 | Gp0101259 | Ga0057657
Sample NameDown-flow hanging sponge reactor microbial communities from the University of Illinois at Urbana-Champaign, USA - U3-798FC-DHS
Sequencing StatusPermanent Draft
Sequencing Center
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size177699159
Sequencing Scaffolds15
Novel Protein Genes16
Associated Families12

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales2
All Organisms → cellular organisms → Bacteria7
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia2
All Organisms → cellular organisms → Bacteria → Proteobacteria1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Nannocystaceae → Nannocystis2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameDown-Flow Hanging Sponge Reactor Microbial Communities From The University Of Illinois At Urbana-Champaign, Usa
TypeEngineered
TaxonomyEngineered → Bioreactor → Unclassified → Unclassified → Unclassified → Down-Flow Hanging Sponge Reactor → Down-Flow Hanging Sponge Reactor Microbial Communities From The University Of Illinois At Urbana-Champaign, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)na → na → na

Location Information
LocationUSA: University of Illionis
CoordinatesLat. (o)40.114056Long. (o)-88.226756Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003217Metagenome / Metatranscriptome500Y
F009010Metagenome / Metatranscriptome324Y
F014824Metagenome / Metatranscriptome259Y
F027556Metagenome / Metatranscriptome194Y
F037197Metagenome / Metatranscriptome168Y
F037589Metagenome167Y
F054143Metagenome140Y
F070896Metagenome122N
F089567Metagenome / Metatranscriptome109Y
F097376Metagenome / Metatranscriptome104Y
F099502Metagenome / Metatranscriptome103Y
F102931Metagenome / Metatranscriptome101Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
FCL3draft_1000033All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales281350Open in IMG/M
FCL3draft_1000258All Organisms → cellular organisms → Bacteria93414Open in IMG/M
FCL3draft_1000887All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales37125Open in IMG/M
FCL3draft_1000961All Organisms → cellular organisms → Bacteria35160Open in IMG/M
FCL3draft_1001425All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia23207Open in IMG/M
FCL3draft_1001617All Organisms → cellular organisms → Bacteria20522Open in IMG/M
FCL3draft_1001816All Organisms → cellular organisms → Bacteria18234Open in IMG/M
FCL3draft_1002408All Organisms → cellular organisms → Bacteria → Proteobacteria13878Open in IMG/M
FCL3draft_1003130All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Nannocystaceae → Nannocystis10512Open in IMG/M
FCL3draft_1003289All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales9918Open in IMG/M
FCL3draft_1003645All Organisms → cellular organisms → Bacteria8811Open in IMG/M
FCL3draft_1004265All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia7404Open in IMG/M
FCL3draft_1008302All Organisms → cellular organisms → Bacteria3780Open in IMG/M
FCL3draft_1010590All Organisms → cellular organisms → Bacteria2988Open in IMG/M
FCL3draft_1014570All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Nannocystaceae → Nannocystis2196Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
FCL3draft_1000033FCL3draft_1000033124F097376MKKAVSPKKNKTANDVVPQKKQVKTGPVELDLAELKKVSGGLPRGGWERMK*
FCL3draft_1000258FCL3draft_100025861F027556MPTIIAHIPLQSPGRTQVKGSGRKLVHRCEDAAGHRHQQRLPLGSVRGVVYLDALCLHCGAHFVWTDDE*
FCL3draft_1000301FCL3draft_100030149F054143MLFVAEYEFTWELLEAVIAKRLEWDAEKPDDFRFIGEYVWQDHDPPFRGVVVVEADSVGALNAFALHYGPTLKVKVHPASDVVAAIQAIGNGSSRSRPKRTASKARRKR*
FCL3draft_1000887FCL3draft_100088712F009010MVDLPESFYLLVNQPMLIVLPILVFAALALWSRSFTAALCAVAWNLYLIYELGMKAGEFCDGSACLKRTPLYLVYPVLAILSLVALVQVYVHLRDKRQRLNGIAPPRQEA*
FCL3draft_1000961FCL3draft_100096132F099502MPQAHKENVLGTILGWGALGVFALVFGWTVGAPLIIGERWADQQDKAIAVLKNQKPEGSTSTIDDLIRDYSIQMKGKEVYVGEFNWSAIQQEGPEYQVTLLWREGNERKAALWRVNLQTDEVRPQGDEASNLIKRIQGRS*
FCL3draft_1001425FCL3draft_100142518F102931MINHNRTYSAALAVLAVLALLSSGLLLFLAGVSAGGAVNTHLPEWSLPWVAIINCAYGLAIIVTLCARRFRPETGRVLTRALNWALLPAMPGGTVVGLYGLLRADRESR*
FCL3draft_1001617FCL3draft_100161715F003217MAESEFIVQKVEWFQFRDADGSAFFVMVSSLPNGFFTAVPCQIPTTLANHSLMALAATPDEALAQLQANLGGKTPEQIFAHD*
FCL3draft_1001816FCL3draft_100181614F037589MIPMSTAQIIPASALRPGLATIIVSLPDRTIRSCVFMVQVWPHGVVQVAFTSGELLTLSTRTMVGRIEHTARPRPRASLGRGR*
FCL3draft_1002408FCL3draft_10024081F014824KSRGVFTPVYSTHLNLPYIHSNNILTVTNNKNTTIFTINPLDQITKGTIDIIINSKSKIKKMIQKMKNRKDTGNTLTLKESNPHSNPSDLIIFDLTNKLPTPITKGITKEINK*
FCL3draft_1003130FCL3draft_10031306F037589MPKTHRIIPASALRPGLATIVVSLPDRTIRSRALMVQAYPHGVVQVAFASGDVITLMARAMVGRIDEPPPVGRPRRAPAA*
FCL3draft_1003289FCL3draft_10032896F037589VTPGAPRAPRVPRIVPATSLQPGLATIVVSLPRRTIRSRVLMVQVHPQGGVQVAFASGDVVTLSERTMVGRIDPPARPSRRASRA*
FCL3draft_1003645FCL3draft_10036452F037589MTTAQIIPASALRPGLATIVVSLPDRTIRSPVFMVELRPHGVVRVAFTSGDMITLSARTMVGRIARPPARRRAS*
FCL3draft_1004265FCL3draft_10042658F037197LNFKEMATPEEASASESASEINTGLKLDDYPGINRPSLAMTGFAARLV*
FCL3draft_1008302FCL3draft_10083022F037589MHTPRIIPASALRPGLATIIVSLPDRTIRSPVFMVELRPHGVVRVAFTSGDMITLSARTMVGHIEHPPARRRAS*
FCL3draft_1010590FCL3draft_10105903F089567MAATETIQFQATPELRQQLEEAAAQLNLSLSAYVLYLYEKMAPGRDGARLDRHVQEVFGKHGELMRRLAK*
FCL3draft_1014570FCL3draft_10145704F070896MEFEFATARNMRLGALVMARGEFCVEVLEPDECVAFVLLRGCLQITRQRAGEPASYCLHATPRAPLVILNPGTYTIVAERSAVGLRGVRRRA*
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