Sample 3300003311

3300003311: Looe Key pool

Overview

Basic Information
IMG/M Taxon OID	3300003311 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0110137 \| Gp0072775 \| Ga0057738
Sample Name	Looe Key pool
Sequencing Status	Permanent Draft
Sequencing Center
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	124960495
Sequencing Scaffolds	28
Novel Protein Genes	33
Associated Families	22

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	1
Not Available	12
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Cnidaria → Anthozoa → Hexacorallia → Scleractinia → Faviina → Merulinidae → Orbicella → Orbicella faveolata	4
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Cnidaria → Anthozoa	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Cnidaria → Anthozoa → Hexacorallia → Scleractinia	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Synechococcaceae → Synechococcus → unclassified Synechococcus → Synechococcus sp. JA-3-3Ab	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Cnidaria → Anthozoa → Hexacorallia → Scleractinia → Astrocoeniina → Pocilloporidae → Stylophora → Stylophora pistillata	4
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Cnidaria → Anthozoa → Hexacorallia → Scleractinia → Astrocoeniina → Pocilloporidae → Pocillopora → Pocillopora damicornis	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Cnidaria Microbial Communities From The Caribbean, With Black Band Disease
Type	Host-Associated
Taxonomy	Host-Associated → Invertebrates → Cnidaria → Unclassified → Unclassified → Cnidaria → Cnidaria Microbial Communities From The Caribbean, With Black Band Disease

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal surface

Location Information
Location	Looe Key National Marine Sanctuary, Florida, USA
Coordinates	Lat. (^o)	24.5484806	Long. (^o)	-81.4059137	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000221	Metagenome / Metatranscriptome	1543	Y
F001105	Metagenome / Metatranscriptome	776	Y
F005693	Metagenome / Metatranscriptome	392	Y
F007159	Metagenome / Metatranscriptome	356	Y
F010974	Metagenome / Metatranscriptome	296	Y
F012646	Metagenome / Metatranscriptome	278	Y
F017438	Metagenome / Metatranscriptome	240	Y
F020846	Metagenome / Metatranscriptome	221	Y
F021048	Metagenome / Metatranscriptome	220	Y
F024251	Metagenome / Metatranscriptome	206	Y
F025918	Metagenome / Metatranscriptome	199	Y
F043217	Metagenome / Metatranscriptome	156	Y
F046404	Metagenome / Metatranscriptome	151	Y
F048764	Metagenome / Metatranscriptome	147	Y
F053793	Metagenome / Metatranscriptome	140	Y
F054574	Metagenome / Metatranscriptome	139	Y
F056319	Metagenome / Metatranscriptome	137	Y
F061437	Metagenome	131	Y
F091323	Metagenome / Metatranscriptome	107	Y
F100363	Metagenome / Metatranscriptome	102	Y
F100364	Metagenome / Metatranscriptome	102	Y
F104455	Metagenome / Metatranscriptome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
LKpool_1006110	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	2401	Open in IMG/M
LKpool_1011212	Not Available	1424	Open in IMG/M
LKpool_1014152	Not Available	1151	Open in IMG/M
LKpool_1014983	Not Available	1089	Open in IMG/M
LKpool_1017365	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Cnidaria → Anthozoa → Hexacorallia → Scleractinia → Faviina → Merulinidae → Orbicella → Orbicella faveolata	963	Open in IMG/M
LKpool_1018261	Not Available	921	Open in IMG/M
LKpool_1018714	Not Available	901	Open in IMG/M
LKpool_1018764	Not Available	899	Open in IMG/M
LKpool_1020143	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Cnidaria → Anthozoa	852	Open in IMG/M
LKpool_1021075	Not Available	821	Open in IMG/M
LKpool_1021750	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Cnidaria → Anthozoa → Hexacorallia → Scleractinia	977	Open in IMG/M
LKpool_1022843	Not Available	772	Open in IMG/M
LKpool_1024953	Not Available	725	Open in IMG/M
LKpool_1028963	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Cnidaria → Anthozoa → Hexacorallia → Scleractinia → Faviina → Merulinidae → Orbicella → Orbicella faveolata	769	Open in IMG/M
LKpool_1029068	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Synechococcaceae → Synechococcus → unclassified Synechococcus → Synechococcus sp. JA-3-3Ab	653	Open in IMG/M
LKpool_1029887	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Cnidaria → Anthozoa → Hexacorallia → Scleractinia → Astrocoeniina → Pocilloporidae → Stylophora → Stylophora pistillata	642	Open in IMG/M
LKpool_1030504	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Cnidaria → Anthozoa → Hexacorallia → Scleractinia → Astrocoeniina → Pocilloporidae → Pocillopora → Pocillopora damicornis	634	Open in IMG/M
LKpool_1033863	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Cnidaria → Anthozoa → Hexacorallia → Scleractinia → Astrocoeniina → Pocilloporidae → Stylophora → Stylophora pistillata	594	Open in IMG/M
LKpool_1034276	Not Available	590	Open in IMG/M
LKpool_1036453	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Cnidaria → Anthozoa → Hexacorallia → Scleractinia → Astrocoeniina → Pocilloporidae → Stylophora → Stylophora pistillata	568	Open in IMG/M
LKpool_1036853	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Cnidaria → Anthozoa → Hexacorallia → Scleractinia → Astrocoeniina → Pocilloporidae → Pocillopora → Pocillopora damicornis	565	Open in IMG/M
LKpool_1038372	Not Available	553	Open in IMG/M
LKpool_1040137	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Cnidaria → Anthozoa → Hexacorallia → Scleractinia → Astrocoeniina → Pocilloporidae → Pocillopora → Pocillopora damicornis	539	Open in IMG/M
LKpool_1041187	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Cnidaria → Anthozoa → Hexacorallia → Scleractinia → Faviina → Merulinidae → Orbicella → Orbicella faveolata	531	Open in IMG/M
LKpool_1043276	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Cnidaria → Anthozoa → Hexacorallia → Scleractinia	518	Open in IMG/M
LKpool_1044654	Not Available	732	Open in IMG/M
LKpool_1044740	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Cnidaria → Anthozoa → Hexacorallia → Scleractinia → Faviina → Merulinidae → Orbicella → Orbicella faveolata	509	Open in IMG/M
LKpool_1134829	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Cnidaria → Anthozoa → Hexacorallia → Scleractinia → Astrocoeniina → Pocilloporidae → Stylophora → Stylophora pistillata	533	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
LKpool_1006110	LKpool_10061103	F046404	LEKIINEKMSKRRIQIIELQKLENPQKEEKRLLIRLHIF*
LKpool_1011212	LKpool_10112121	F100363	VTSTFTSITLTNIFHIAVHMFSKWSQMTSKCGKNKIVAHEAIAKCVTDVLTTF*
LKpool_1014152	LKpool_10141522	F053793	MEVPDNLRPTHNEKTFGAMKAERAVKRITFKSHEASPGETLYVSVPKLNENEVLVPGSLALLLDIDLSGGHADNLLVQNVTRALVDKLVVKFGGTTLQDT
LKpool_1014983	LKpool_10149832	F021048	MVVLTIVTEKNGKTIYFEDPIPKVHFMKLISCSLFNSWHTLKKEGSAALGDIQNPKGKSISKILPGHYNLESLAKEIDSLFAKYKYDLETETNTPLGQLVIKNTGKKTIELDRDLARLLGSGRNLGYITFVKGLTYPTTYFVHCDLIDKEQNLFNGKKSDVLARFDITGKPFEKVSYHGSPQQVLRDCSTDEFINSITISVKDENGELFDFNGFAMEFELELN*
LKpool_1017365	LKpool_10173651	F104455	MILEGIQSEDLCKIRSGAGDKKTSGVVAEEKLNEIFGKKYRISLDHQIITDHGVFYPQALFNDLTFELTLAEASQVVKGSDPDKLKYKLTNIQLEYEMIRSNTLADEAYSVYSGGKGFAYDHVQRSEVVPFKKETDTRINIKVNPQRLSLKAILLLFMEPYGKGARDSEKYIFPDLTKVSVTINGSPNMLYNEGIEGKDMWEEARRFFVKEKNKTEHMDLTKFYTGDKFGLVIDLRSMADQAMHGSGKRIVNSTDGVFLEIERKAEGSGNVNCHVFAISDSQFNIMGRQLESVQY*
LKpool_1018261	LKpool_10182612	F005693	MNFTVPFWKYKYSKLKLRVFLAGHSVVAVVTYIVTKMITCSPMIGQFFDTMIVASTDKEWL*
LKpool_1018714	LKpool_10187141	F005693	VPFLKYKYLKLKLRVFLAGHTAAMVTYCVTKKITKCSPMIGQFFDTMIVASTDQGW*
LKpool_1018764	LKpool_10187641	F021048	MVVLTLVSKKNGERIFFDEPLPKVHLAKVISCSLHNSWDTLKKEGSASLGDIQSTEGVSISNKLLPGHYDLERLAKEIDGLFVKRNYKLETEINTPVGQLVVKNFGGKNVELDRDLADLLGIHRKLKLITFVKKLSSPTTYFIHCDLIDKEKNLFNGKKSSLLAKFDVKGKAYEKVTYLSPPQEVYRECFSADEVSSITLSVKDQNGELFDFNGFEMDFVLDLN*
LKpool_1020143	LKpool_10201432	F001105	MADNKLVKTILDAAILTGLAAGIGWVAKKVLKENFTSDPSSNVTNYAKFTAVMAGSIALKDYIDDQGMIPKKF*
LKpool_1021075	LKpool_10210751	F010974	MKQPKNSIHLPNPTRNTRKIANKLRTVASAEINLQSKHDLICHVAKEKAATSAHSRAHVIPFFSVFIIPFESNASIKPKENIFYTQ*
LKpool_1021750	LKpool_10217501	F020846	MSVPENLHPTHNEKTFGAMKAKRMVNRATFKTSEASPGETLYVDVPKLNENEVLVPGSLALLFNIDLSGGHANNFLVQNVTRALVDKMVVKFGGAILEDTNGYDVYKTFEDLFLSQERRDGMILEGIQSEDLCKIRSGAGDKKTSGVAAENKLEEIFGKKYRIRLDHQILTDHGVFYPQALYNNLTFELTLAQASQVVKGSDPTKLKFKLTNIQLEYEMIRSKTLADEAH
LKpool_1022240	LKpool_10222401	F000221	MAIQMKAINIEQYFHVVLFIMLYKVVLTFKSVDETLVCGHSNERY*
LKpool_1022240	LKpool_10222402	F000221	MNAINIEQYFHVVLFIMLYKVVLTFKSVDKTLVCGHSNQSY*
LKpool_1022843	LKpool_10228431	F005693	LKLKLRVFLADHTVSMVTYYVRKMTTTCSPMIGQFFDTIIVASTDKEWL*
LKpool_1023652	LKpool_10236523	F000221	MKTIDKNFHEVLLITMYKVDLTFKSLDETLVCDHSNESH*
LKpool_1024953	LKpool_10249532	F024251	MAAAQSSNCQLSDAIQKFPPELHDIIYNLYVAIKLRQRAALGWDKVHEHISKLPFCHNMQRIVHMIICFEYENCRFEGCCFPCYESGTHHKVSLSPPMELIPLIENNIEYANFLKICSWDGYDWHEWYNFISKKFQPLSLQQGESIFLF*
LKpool_1028963	LKpool_10289631	F056319	MPPQIRAFYVFHVYFTVRRVLYQMGGIQSISALPGDPTFNQFNNHFDVASFKRLCNEFGVDPSSDFRFTHGANHGLGSVYVYAGGPTKTDFLYPGTNKFSDEGGKAIQGNLIYFIEPGSASEAQFDWFAPNTASGLTQAGLSRVNQSIEAFVYCVLGAQVNVRSSILGSGGRAKEAQSEFLVL
LKpool_1029068	LKpool_10290681	F056319	ISREIFDNGINLPPQIRAFYIFHVYFTVRRILYQLGGIQSISALPGDPTFNQFNNHYDVASYKRLCNEFGIDPSSDFRFTHGANHGLGSVYVYAGGATKTDFLYPGSNKFSDEGGKAIQGNLIYFIEPGAPSDTQSDWFAPNTASGLTQAGLSRINQSIEAFVYCILGSQVNVRSSILGSGGRAKEAQSEFLVLVEDAIRQPDLAESVQRYQLAVDE
LKpool_1029887	LKpool_10298871	F007159	VASWLVRSLPDRALAGDIVLCSWARHLTLTVPLSTQVYKWVPANLMLGGNLAMD*
LKpool_1030504	LKpool_10305041	F043217	VAIELRVVQFWSEIILVISNHIRAACSFEFEITRMISDQIALHSVQLALYSTYCNSA*
LKpool_1032607	LKpool_10326071	F000221	MTAIEQYLHVVLFIMLYKVVLTLKSVDETLVYMCNHSNKSY*
LKpool_1033863	LKpool_10338631	F001105	KLVKTLTDAATITGIAAGYGWVSKKVIKEPMTSDPSTNLMNYVKFTLIVAASLATKTYLEDQKILPS*
LKpool_1034276	LKpool_10342762	F061437	MQPLQNDLRSPAAKDNSITHTAKAGSNLDAATTMRSAETELQNTIELRATASEFVASKPDLDARAKKRRF*
LKpool_1034320	LKpool_10343201	F017438	YTGDRFGLVIDLRTMANQAMHGSGTRLVNSTEGVFLEIERKAEGSGNVNCHVFVISDSQLNIQDRQLESVQF*
LKpool_1036453	LKpool_10364531	F054574	LEVFLDGMLVHRRVTPSIKFPGTHLYTWVERGTVRKKCLDQ*
LKpool_1036853	LKpool_10368531	F001105	MSDNKLVKTILDAATLTGLVAVIGWLAKKVLKESFTSDPSSNVMNYAKFTAAMAGSIALKDYLDDQGMIPKKF*
LKpool_1038372	LKpool_10383721	F021048	KGKSISKIQPGHYDLESLAKAMESLFAQYKYDLKIKTNTPFGQLVIENFKGKQVEVDRDLARLFDSGRDLGVKTTVKLLTSPTTYFVHCDLIDKEQNLFNGKKSDLLARFDITGKPFEKVSYHSSQQQVLRDCSTDQFINSITLCVKDQNGELFDFKGFDMEFELELS*
LKpool_1040137	LKpool_10401371	F001105	MSDNKLVKTILDAAILTGLAAGIGWIAKKVLKENFTSDPSSNVMNYAKFTAVMAGSIALK
LKpool_1041187	LKpool_10411872	F100364	ISVWVLTQKLTSITASFRENVAAIVLFYTPSAKTMKAIFDDYAGDLTLDEYKGLISKMKARKFSYLVFLLRHPFGVSYFE*
LKpool_1043276	LKpool_10432761	F048764	LKAVCRHSNVFESFYFQIRKLFAGVLYEMSVPGNLLPTFSEMTFRAMKAERKVNRVTFKKTEAEPGDTLYVDVPKLNKNEVIVPGSLGLLFNIDLSGGHANNFLVQNVTRALVERMIVKFGGTILEDTHGYNVYKTFEDLFLSQEKREGMILEGIQSEDLCKIRSGAGDKKT
LKpool_1044654	LKpool_10446542	F025918	MEKVAGEQDLALQQHFTYKSSKFSENSNCSINLLFNSRGLKLSHFGIFDALFPFLAFFKL
LKpool_1044740	LKpool_10447401	F091323	MAKWWQAPGVAQKAVIAKAKAWSNFLKHFPKADKSRFIAEPHFDEKLNATAEVFFKESGGSLKSVFGSDRQYWSAEMKRALGLGDSGGFPYQLSPLGSKASLPIPAEPFDGKAPSLKKIFNTDIKIFVTPDRYFTTKFREIFQKTKLRH
LKpool_1134829	LKpool_11348291	F012646	MKLGVNNEVNPETKKAALKLMAGGPSKINPPNSHPSNPIHKAAMAESKKAASTVTQQAQPTAGKTEPEVSDKTPQHEINKTAVIIGVVGVVFLFMAWR*

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300003311: Looe Key pool

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences