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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300003314 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0069917 | Gp0103939 | Ga0057743 |
| Sample Name | Hypersaline bacterial communities from Bras del Port, Santa Pola, Spain - Pena Hueca_Prokaryotes |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Lifesequencing S.L. |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 229217634 |
| Sequencing Scaffolds | 7 |
| Novel Protein Genes | 7 |
| Associated Families | 4 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria | 2 |
| Not Available | 2 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kirjokansivirales | 1 |
| All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Halorubraceae → Halorubrum → unclassified Halorubrum → Halorubrum sp. 48-1-W | 1 |
| All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Haloferacaceae → Haloferax → Haloferax sulfurifontis | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Hypersaline Viral And Bacterial Communities From Bras Del Port, Santa Pola, Spain |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline Samples → Hypersaline Viral And Bacterial Communities From Bras Del Port, Santa Pola, Spain |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | aquatic biome → saline evaporation pond → hypersaline water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Hypersaline (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Pena Hueca, Alava, Spain | |||||||
| Coordinates | Lat. (o) | 42.65689 | Long. (o) | -2.670449 | Alt. (m) | N/A | Depth (m) | .2 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F066493 | Metagenome | 126 | Y |
| F083454 | Metagenome | 113 | N |
| F085171 | Metagenome | 111 | N |
| F098766 | Metagenome | 103 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| ProkHueca_1010887 | All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria | 3002 | Open in IMG/M |
| ProkHueca_1013996 | All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria | 2565 | Open in IMG/M |
| ProkHueca_1027294 | Not Available | 1667 | Open in IMG/M |
| ProkHueca_1028005 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kirjokansivirales | 2238 | Open in IMG/M |
| ProkHueca_1033450 | Not Available | 1448 | Open in IMG/M |
| ProkHueca_1080668 | All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Halorubraceae → Halorubrum → unclassified Halorubrum → Halorubrum sp. 48-1-W | 765 | Open in IMG/M |
| ProkHueca_1099584 | All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Haloferacaceae → Haloferax → Haloferax sulfurifontis | 626 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| ProkHueca_1010887 | ProkHueca_10108876 | F085171 | MSKRQKTHTDLDGLIDLDSRSLIKLGNSAVVSIPSADDLGIIGNIDDLDAAVSVRVVEPNQILIEARVDLSNVDLDDIDLTVD* |
| ProkHueca_1013996 | ProkHueca_10139961 | F085171 | SGPRTAAWRATEDKMSKRQKTHTDLDGLIDLDSRSLIKLGNSAVVSIPSADDLGIIGNIDDLDAAVSVRVVEPNQIVIEARVDLSNVDLDDMDLNFD* |
| ProkHueca_1027294 | ProkHueca_10272945 | F066493 | MTEQRREWADGVVDVADELVQEYSAEGAIERLQNRRQTSSDELQSRCTEAIAYIRREVLADEQS* |
| ProkHueca_1028005 | ProkHueca_10280054 | F066493 | MSEREWKDGVVDVADELVQQNSAEGAIERLQTRRKTSSDELQARCNEAIAYIRREVQTDE |
| ProkHueca_1033450 | ProkHueca_10334503 | F083454 | MSDKTTIGLKVSHERNARIERKVDDAGYRSRQAYIRDLIDDDLGFDSSVEATTSDQTPEDRRDAELYDALLDNISLKGWTRYERFSGDIAQSTGYSKDALFGELKSLRRNGFCTIRVLNPTDENPHYE |
| ProkHueca_1080668 | ProkHueca_10806683 | F098766 | MSHPSCAICGREADGADHVKIDVERVPPEEPPETYYFHKRCFDRSQSWERGL* |
| ProkHueca_1099584 | ProkHueca_10995842 | F098766 | LSHPTCSLCGREADGANHVKVEVERIPPEEPPKTYYFHPQCFNRSQNWERGL* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |