Sample 3300003359

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300003359

3300003359: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05A3w-11

Overview

Basic Information
IMG/M Taxon OID	3300003359 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0095510 \| Gp0091563 \| Ga0008879
Sample Name	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05A3w-11
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	887018
Sequencing Scaffolds	2
Novel Protein Genes	2
Associated Families	2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	terrestrial biome → agricultural field → agricultural soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Wisconsin, United States
Coordinates	Lat. (^o)	43.3	Long. (^o)	-89.38	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F089147	Metagenome / Metatranscriptome	109	Y
F098176	Metagenome	104	N

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
JGI26322J50206_10016	All Organisms → cellular organisms → Bacteria	775	Open in IMG/M
JGI26322J50206_10061	Not Available	520	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI26322J50206_10016	JGI26322J50206_100162	F089147	GIYTKRDSLLSIAYSEELISATISATLQRTDRHHGIVGQKRCHFQGDS*
JGI26322J50206_10061	JGI26322J50206_100611	F098176	ICGMSIVGTSEAYWLTGGGFTGWHQIHHEDENIALSTAAQLPPQCALVASYRNTSETLVPRGRKRNRMYLGLLRADLLENDGTIIAGDATAVRSAMNELNTALEGITDADPIFAPQGLAIVSPTAGECYEVNEVGCGEAVDTHRSRRQKEPENMIWQAAS*

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