NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300003461

3300003461: Ore pile and mine drainage contaminated soil microbial communities from Mina do Sossego, Brazil - P4 sample



Overview

Basic Information
IMG/M Taxon OID3300003461 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0110185 | Gp0103975 | Ga0059328
Sample NameOre pile and mine drainage contaminated soil microbial communities from Mina do Sossego, Brazil - P4 sample
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of Campinas
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size178621212
Sequencing Scaffolds30
Novel Protein Genes30
Associated Families27

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia3
All Organisms → cellular organisms → Bacteria10
All Organisms → cellular organisms → Bacteria → Terrabacteria group1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium2
Not Available4
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1
All Organisms → cellular organisms → Bacteria → Proteobacteria3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Erythrobacteraceae → Qipengyuania → Qipengyuania soli1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → Haliangium → Haliangium ochraceum1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameOre Pile And Mine Drainage Contaminated Soil Microbial Communities From Mina Do Sossego, Brazil, In A Copper Mine
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Mine Drainage → Ore Pile And Mine Drainage Contaminated Soil → Ore Pile And Mine Drainage Contaminated Soil Microbial Communities From Mina Do Sossego, Brazil, In A Copper Mine

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biome → mine drainage → contaminated soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationMina do Sossego, Brazil
CoordinatesLat. (o)-6.426389Long. (o)-50.051389Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002347Metagenome / Metatranscriptome568Y
F002436Metagenome / Metatranscriptome559Y
F002525Metagenome / Metatranscriptome552Y
F009579Metagenome / Metatranscriptome316Y
F012756Metagenome / Metatranscriptome277Y
F022012Metagenome216Y
F022102Metagenome / Metatranscriptome216Y
F025319Metagenome202Y
F025496Metagenome / Metatranscriptome201Y
F035205Metagenome172Y
F035663Metagenome / Metatranscriptome171Y
F037949Metagenome167Y
F041174Metagenome / Metatranscriptome160Y
F052858Metagenome / Metatranscriptome142Y
F063817Metagenome129Y
F065516Metagenome / Metatranscriptome127Y
F068263Metagenome125Y
F070942Metagenome / Metatranscriptome122Y
F079908Metagenome / Metatranscriptome115Y
F082300Metagenome113Y
F082782Metagenome / Metatranscriptome113Y
F088485Metagenome109Y
F091491Metagenome107Y
F095047Metagenome / Metatranscriptome105Y
F097562Metagenome / Metatranscriptome104Y
F098522Metagenome / Metatranscriptome103Y
F103462Metagenome101Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
P42013CM_1004405All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia5640Open in IMG/M
P42013CM_1005438All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia4559Open in IMG/M
P42013CM_1005814All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia4287Open in IMG/M
P42013CM_1006057All Organisms → cellular organisms → Bacteria4143Open in IMG/M
P42013CM_1007867All Organisms → cellular organisms → Bacteria3365Open in IMG/M
P42013CM_1009052All Organisms → cellular organisms → Bacteria3028Open in IMG/M
P42013CM_1009290All Organisms → cellular organisms → Bacteria2976Open in IMG/M
P42013CM_1009912All Organisms → cellular organisms → Bacteria2837Open in IMG/M
P42013CM_1010785All Organisms → cellular organisms → Bacteria2672Open in IMG/M
P42013CM_1011346All Organisms → cellular organisms → Bacteria → Terrabacteria group2581Open in IMG/M
P42013CM_1018616All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1848Open in IMG/M
P42013CM_1028292Not Available1380Open in IMG/M
P42013CM_1029152All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1353Open in IMG/M
P42013CM_1030080All Organisms → cellular organisms → Bacteria1322Open in IMG/M
P42013CM_1031403All Organisms → cellular organisms → Bacteria → Proteobacteria1283Open in IMG/M
P42013CM_1035486All Organisms → cellular organisms → Bacteria → Proteobacteria1177Open in IMG/M
P42013CM_1036609All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas1151Open in IMG/M
P42013CM_1042658All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1028Open in IMG/M
P42013CM_1045585All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae978Open in IMG/M
P42013CM_1045652All Organisms → cellular organisms → Bacteria977Open in IMG/M
P42013CM_1046596Not Available963Open in IMG/M
P42013CM_1052628All Organisms → cellular organisms → Bacteria877Open in IMG/M
P42013CM_1060227All Organisms → cellular organisms → Bacteria792Open in IMG/M
P42013CM_1069166All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi712Open in IMG/M
P42013CM_1072656All Organisms → cellular organisms → Bacteria → Proteobacteria685Open in IMG/M
P42013CM_1080069Not Available636Open in IMG/M
P42013CM_1089838All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Erythrobacteraceae → Qipengyuania → Qipengyuania soli579Open in IMG/M
P42013CM_1092638All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria564Open in IMG/M
P42013CM_1097920All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → Haliangium → Haliangium ochraceum536Open in IMG/M
P42013CM_1098161Not Available535Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
P42013CM_1004405P42013CM_10044057F070942MPQTGRASVGTGVVLIAVGAVLAFAVDVPARVERHVDVLDVGLILIWAGILTLVMQVVMHRPRGSPSRRARTYDSRADEWYERDVHRPGYAGETRRYPTVRDR*
P42013CM_1005438P42013CM_10054385F098522MTEMPDEDVDPRVAEMVVAIRDRFGLRGLRGARWLIEQEIRLAEDALAGLGEDAPPVPPRFAEP*
P42013CM_1005814P42013CM_10058143F035205MAAKGQPASVRLRLTWSQRRAFVLTVAGFQVLVWADALLNDGRFGGNWRTALVGLGLIGMAAATWWVGTSLTRRGIVIHAVPTLVIPWDEVHEIEVEHQLGIKTVVVHHGVTSRRRTRLSAPTTGPLGRDEQFQEKVRVLRSYWAAQRAGQAA*
P42013CM_1006057P42013CM_10060572F012756MRIRAAKREELAPRSKERALSPRQLAALQREEEIRKALGRLKSEDDLIAIELDGSEKVPTMRQAVKKAIAAHKPGTKMAIRGSTIYLSTGNLPGGRGGRRPKAAA*
P42013CM_1007867P42013CM_10078672F012756MRIRAARREELAPKSRERALSPRQLAALQREDEIRRALGRLKTDDDLIAIELDAAEKVPTMRQAVKKAIAAHKPGTQMAIRGSTIYLSMGRLPGGRGGRRPKAAA*
P42013CM_1009052P42013CM_10090524F002525VWAGVDCVWEQEKLEAREMLENAAESLTSGARFVSPLFLSLLID*
P42013CM_1009290P42013CM_10092901F082782VHVTEAACQALSDLLGRRGGDKCLRLSTTQGNYRFILDEPIEQDITFAHEERIVLVVSETVSRDLWGITVDCSLETGKRKLIFRKARQGEPFDTTRDEGDIVPPEWRASEHERLLQEIAEIGRQIASLRGATKNSLREQLHGLEAQKQERWDAIRALWAGDGGWHRRQNGNGVVAKAD*
P42013CM_1009912P42013CM_10099122F041174VTRSDGFDRRPVAVGLTRDGRRVHLPVGNQNLAPVSLDVLRSLLAGLESLLGLLITGSRRENGGTRRDERR*
P42013CM_1010785P42013CM_10107853F037949MRNGQPPERPVFLSHPSERVRARQAQVERYKVKLERTYRSWLHCRSPELKEVLEAKMADYEDRIDHLERLNRALTGTDDG*
P42013CM_1011346P42013CM_10113462F002436VRTSNGLDRRPVAVVVTSDGRRVQMPIEDGSLEVSLLSLIRSLLVGIESVLALITGSRRENRGTRRDGR*
P42013CM_1018616P42013CM_10186161F025496MPSLRDHLIRTPEVRYRNLSAWMAPALGERATPLPDRFFEEAALTVLAHVFRESGPIREQLVYERRRFERLVQLIHRLPERGGGG*
P42013CM_1028292P42013CM_10282923F068263MPIGVEAYRVVDSSDELSSGDIAYLSLARTRIVGEGPPGESFDPVGRIPAYPRPGLLALPHHREVAVDTMFALVVTHSCEIDRQKNMDAAADHFDCRLTVAPIVPEPAVTLIGPDGKEHGAAWAAIEANAPVSSLFLPPIPDVSVLAPGVEALPWPRAFADLRGLATVSRGMVQADRLCGLAPAYLGVLQRQLARFFTWRDLARHELVEALIGRRIVEAIPLNSKGDRLRVALTADDGSSVTVEIRAR*
P42013CM_1029152P42013CM_10291522F091491MLLGKVIKLAMSAQSQFPEDVAARDPELASRLAAEAGRAGLEVPAYVADTVRRFMAHEDGESWTTIVGNIQRSDDPGFAFLSTIVRARLDHRCEQHG*
P42013CM_1030080P42013CM_10300803F009579MNGLELVVAFLAGVVMGGALDFFVLPLLVDAWIDRRRRHGR*
P42013CM_1031403P42013CM_10314031F103462MKRALVLVLLAAGCSKGASDDQCKQLLTHVVDIEFKAAGAAATSDALKAEIAKQKTAVTEAKSKEFLETCKKKMAKARVECALAATELDGD
P42013CM_1035486P42013CM_10354863F091491MLLGKVIKLAMTAQSDFPDDVLLREPDFAPLLEAEATRAGMDVPRFVADTVQRFMAYEDGESWTTIVGNIQRTDDPGYAFISTI
P42013CM_1036609P42013CM_10366092F052858MQRIGEMFHRRPRDDFGEGDHQEYVESGYRDILLVGGAAVVLVGAFVISLF*
P42013CM_1042658P42013CM_10426582F025496MNSLRDHLNRTPEVRSRNLAAWMAPALGERATPLPDRFFEEAALTVLAHVFRDSGPIREALVFERRRFERLVQLIHRLPATGGDG*
P42013CM_1045585P42013CM_10455852F035663VNQQELTEIHQTLTAVHDAVGSLTFPSCDQDDVCELIDRVESELASAHPNVQVIDTFLNSIARSLRAQPEAREACLRIEEVLERTGLPSTWQAGI*
P42013CM_1045652P42013CM_10456521F022012MKKLFMLACVLAFATSAFAEPGKIKASYSGIVEKYDAATRTLTIKKKDKTGEFVITDTSEVLQGKTKADASAFAAGQKVDVEFVMDGAKKLVVKAKVSGSATK*
P42013CM_1046596P42013CM_10465961F025319MNIRNAKNSTAILAGISGLVFALVYVGLEFLHEMPKGISIYGDANTITVWHFPLIWLLAGILFYCVFYAVGTIRGGKVKERAITFSLSVAVAAILTLFWLIPMVAGLVQCFGRSSC*
P42013CM_1052628P42013CM_10526282F088485AGSGATGAAEGRGSRVADAVDVPIADLRHAWEQGLARALGWEDA*
P42013CM_1060227P42013CM_10602272F022102MPPMQDICPSRSKNAHIYIHTLHRACVMLGGERKLAAYLGVSVATVEGWLNGKGRPPDEVFLRCLDLVESSRPQ*
P42013CM_1069166P42013CM_10691661F065516MDMSAIADWFTILFFLWFGLKNFIPALDKGFFATIGAIIALFAAVFIFLSP*
P42013CM_1072656P42013CM_10726562F063817MDPQFTSRYAQQGRRLELMGFAVEDMKPDELYAVIGFLLEKISDDSRAELCQEAPLGAPHSDPPKNDGLVEG*
P42013CM_1080069P42013CM_10800692F095047VDFFEKYRLQDVGPTRTRLAELISIFDAQRHELTVAELDDLREEMETLMARLREERENL*
P42013CM_1089838P42013CM_10898381F082300FNLTQGRTFDTLGWDSWPSAPTPSPTGFRWNATIGRYEVLAKGYAGWSRLEAKPDRFGYTPFEYDVFGGAETKLPFYMLVFAPPDRGPADLYVGNARIFEGGRAHSYFAFGLATEPGDVPVTGTMTCTFGEDEIGWGELVVDLGARTMSGWVHPFWGDARYQLTHTSFPAGGTTFTDTFGTGGVLEGRFFGP
P42013CM_1092638P42013CM_10926381F097562VNRDAKTQTALIALARTRRMQRALAHAYIHRDAPLPTLRVSLGYMTSTACTTDDVTGLGHHMMLLGIARAEGVAYVVEEISERDAPIIYRLWLSGARAGHLVPIHAWYEQASNADEIRARIAAIA
P42013CM_1097920P42013CM_10979201F079908MSVDTPPEPEKTPSLRREALLPNERSRGLGTVAVVCTMAGVASGLALATTLMAMQVADSMSVRTCPYSRVVDVQTVDVRPDHGFLGIRYVFRNGVAEVVSVLPGTPA
P42013CM_1098161P42013CM_10981611F002347MNQPEKSRLLQQIAAIPAMEKGKLSAHSSGRHLKLQRWQEGKNHTRHVSADELPAVQSALAGYVQYRQLTEQYAELVIRETRQNIADAKKKNPSRPKSSWPRKKKSNS*
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