NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300003473

3300003473: Fe-reducing enrichment culture from wetland. Sample 3 with anaerobic and aerobic cycling.



Overview

Basic Information
IMG/M Taxon OID3300003473 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0111407 | Gp0099083 | Ga0059302
Sample NameFe-reducing enrichment culture from wetland. Sample 3 with anaerobic and aerobic cycling.
Sequencing StatusPermanent Draft
Sequencing Center
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size476662606
Sequencing Scaffolds18
Novel Protein Genes19
Associated Families7

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Geobacter2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae5
All Organisms → cellular organisms → Bacteria4
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria1
Not Available2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameWetland Sediment Microbial Communities From Dorn Creek, Dane County, Wisconsin, Usa, Enriched For Fe-Cycling Cultures
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Wetland Sediment → Wetland Sediment Microbial Communities From Dorn Creek, Dane County, Wisconsin, Usa, Enriched For Fe-Cycling Cultures

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biome → bayou → sediment
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Sediment (non-saline)

Location Information
LocationDorn Creek (Dane County, WI)
CoordinatesLat. (o)43.135131Long. (o)-89.441777Alt. (m)N/ADepth (m)0 to .3048
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023288Metagenome210Y
F054979Metagenome / Metatranscriptome139Y
F063150Metagenome130Y
F075038Metagenome / Metatranscriptome119Y
F096265Metagenome / Metatranscriptome105Y
F096266Metagenome105Y
F100042Metagenome103Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
FeGluAir_10014839All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales1478Open in IMG/M
FeGluAir_10039860All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Geobacter1189Open in IMG/M
FeGluAir_10042386All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae2131Open in IMG/M
FeGluAir_10045255All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae2053Open in IMG/M
FeGluAir_10048025All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae2416Open in IMG/M
FeGluAir_10069205All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae2588Open in IMG/M
FeGluAir_10102479All Organisms → cellular organisms → Bacteria1517Open in IMG/M
FeGluAir_10150439All Organisms → cellular organisms → Bacteria1249Open in IMG/M
FeGluAir_10156313All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium729Open in IMG/M
FeGluAir_10176428All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria914Open in IMG/M
FeGluAir_10189755Not Available511Open in IMG/M
FeGluAir_10205680Not Available721Open in IMG/M
FeGluAir_10211490All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae2406Open in IMG/M
FeGluAir_10251750All Organisms → cellular organisms → Bacteria1180Open in IMG/M
FeGluAir_10268769All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales867Open in IMG/M
FeGluAir_10315479All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Geobacter966Open in IMG/M
FeGluAir_10489991All Organisms → cellular organisms → Bacteria803Open in IMG/M
FeGluAir_10501038All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales1002Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
FeGluAir_10014839FeGluAir_100148393F096266MIDARIVFLLLTALLLSILVAIAVATFRKNRRQKLEDPKYRMLKDD*
FeGluAir_10039860FeGluAir_100398603F063150MRLSIVLAALLIAGTAQATSYVPQFPQGLEQFTTIEGIKFNDASGKHNPPSIPKSWKLISVSNGEKANANNLWFQDSDGSVYLLQGFTSRNKFIIHEHVYKIPAK*
FeGluAir_10042386FeGluAir_100423863F096266MIDARLVFLLLTTLLLAILSVIAVVTLRKNRRQKLEEPKYRMLKDD*
FeGluAir_10045255FeGluAir_100452552F096266MIDARLVFLLLTALLLLILVAIAVATFRKNRKQKLEDPKYRMLKDD*
FeGluAir_10048025FeGluAir_100480253F096266MIDARIVFLLLTALMLAILTAIAVATLRKKRKQKLEEPKYRMLKDD*
FeGluAir_10069205FeGluAir_100692054F096266MTMDARFVFLLLTGFLLAVLVAITVVTLSKRRKQKLEEPKHRMLEDD*
FeGluAir_10102479FeGluAir_101024792F096266MANRMIEARIVFLLLTALMLAILTAIAVTTLRKKSKQKLEEPKYRMLKDD*
FeGluAir_10150439FeGluAir_101504391F063150MRIFLAITMTVFITPVAWATSYPLPAPPPVLEEFTAVEAVKFRDAQGTVNPKSIPKSWKLISVSTGEKSNSSNMWFQDSDGSIYLLQGFTSQNKFFIHEKVYKIPAK*
FeGluAir_10156313FeGluAir_101563132F063150MRLFLAITIIVFITPAAWATSYPLPVPPPVPKEFISVEAVKFRDVQATNNSPAIPKSWKLISVSNGENSNSSNLWFQDTNGSVYLLQGFTSQNKFILHENMYRIPAK*
FeGluAir_10176428FeGluAir_101764282F096265MAYKKLLFTVLFISAVFLVXLTKQDTSPKEITVDQQVETKQDRKIRPVQGLRIVELSENPARMVIKATDLNRKEPAPTVATDK*
FeGluAir_10189755FeGluAir_101897551F023288WAERLEETMKGHSADRRWGFWLADHGLAMGGLALLAVGAATSWWAMSLGWAALAIAFFAWVAEADGLLALPRLGRVAIRKDFGFDIPFAFKVRRGERVLLFVREEDPERGVWSDVYTVLDRPKGTDGFEPCWGLPPTPIPPGWSLRGRVPVDDLQFEDYERSTYVTRGSL
FeGluAir_10205680FeGluAir_102056801F054979MVIESAAEKFGVPGEVLDLIGRDFISQMVEEFPSLLLPPIMSTLKQEYVRNGLEWVRQNVLPLQKHFLVLKHMYGV*
FeGluAir_10211490FeGluAir_102114902F096266MMDARIVFLLLTGFLLAILIAIAVVTLNKSRKQKLEEPKHRMLEDD*
FeGluAir_10251750FeGluAir_102517501F096266MIDARFVFLLLTALLLAILAAIAVVTLRKSRKQALEEPKYRMLKDD*
FeGluAir_10268769FeGluAir_102687692F096266IFLLITAILLAILTVIAVVTLRKKRRQKLEEPKYRMLEDD*
FeGluAir_10315479FeGluAir_103154791F063150TSYVPQLPQGLEEFTTIEGIKFKDARGTKNPPSIPKSWKLISVSSGEMSNSNNLWFQDVDGSVYLLQGFMSQSKFIIHEHVYKILAK*
FeGluAir_10489991FeGluAir_104899911F096266MIDPRIVFLLLTALMLAILTVIAVATLRKHRKKKLEEPKYRMLEDD*
FeGluAir_10501038FeGluAir_105010382F075038MANTWEIRGGRVTVVEDASTASLVVVARDLKDRDSKIAVLEEIVRKMKG*
FeGluAir_10556079FeGluAir_105560791F100042VSPMSRLKTLARPTGVGSALTAYGMPIEGRDEWLAAVARLLA*
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