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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300003526 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0111355 | Gp0107632 | Ga0060311 |
| Sample Name | Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample LVWS2_TP1_12L |
| Sequencing Status | Permanent Draft |
| Sequencing Center | |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 1890616 |
| Sequencing Scaffolds | 4 |
| Novel Protein Genes | 4 |
| Associated Families | 4 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 4 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Diffuse Hydrothermal Flow Volcanic Vent Microbial Communities From Axial Seamount, Northeast Pacific Ocean |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Background Seawater → Diffuse Hydrothermal Flow Volcanic Vent Microbial Communities From Axial Seamount, Northeast Pacific Ocean |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine hydrothermal vent biome → marine hydrothermal vent → hydrothermal fluid |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Subsurface (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Axial seamount, northeast pacific ocean | |||||||
| Coordinates | Lat. (o) | 45.933251 | Long. (o) | -130.01379 | Alt. (m) | N/A | Depth (m) | 1542 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F011936 | Metagenome / Metatranscriptome | 285 | Y |
| F042865 | Metagenome / Metatranscriptome | 157 | N |
| F054846 | Metagenome / Metatranscriptome | 139 | N |
| F082613 | Metagenome / Metatranscriptome | 113 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| LVWS2TP112L_11138 | Not Available | 533 | Open in IMG/M |
| LVWS2TP112L_12029 | Not Available | 855 | Open in IMG/M |
| LVWS2TP112L_12292 | Not Available | 805 | Open in IMG/M |
| LVWS2TP112L_13687 | Not Available | 521 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| LVWS2TP112L_11138 | LVWS2TP112L_111381 | F042865 | DFNKRIWWQFMQSVVNDLPLNGNVAPENTIRANKSCLYVESTGGTAVLWFNPNGNGSATGWIVK* |
| LVWS2TP112L_12029 | LVWS2TP112L_120292 | F054846 | MSNELDLNDLGLGDNSQSAINEKMPRRGADGRGQSRESRKSLSEHDTARKPERVPMYAQRTMIDTTLIPEGYHGHWVSNNPAGRIDMLLRAGYDFVTKDQNVYSSHVTENGVDSRVSKSGSDGVTLYLMIIPLELYEADQEAKAEKAKEQTATIFGKQRNDP |
| LVWS2TP112L_12292 | LVWS2TP112L_122921 | F082613 | LISTVLMFALDAQLNQQSIVVAGPNATTKDAGIYATKIISVTTSASASNILIGHTNVGFAHWKVIPSRGVSSTTGASIGIDGTANITLQTTFANIADNAIFAGTFDVFSHSYLAALTASAFDTIDTREIGVRLKFNSWSSGAVRLDLSVSAKG* |
| LVWS2TP112L_13687 | LVWS2TP112L_136871 | F011936 | RRKIRGVDLREQLHETRLQKLENGHDMLSRDYSRLNDAIVKISESLMALVVIQEQNKSIMQCMEHQSTTIEKLDGRIDAIELQMPQLVESRQWLMIGLGLIVTAVIVALIALVIK* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |