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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300003626 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0069917 | Gp0107667 | Ga0061038 |
| Sample Name | Hypersaline viral communities from Bras del Port, Santa Pola, Spain - CR30 Febrero14 Julio y septiembre juntos precorrection |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Lifesequencing S.L. |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 2025347 |
| Sequencing Scaffolds | 3 |
| Novel Protein Genes | 4 |
| Associated Families | 3 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → Viruses → Predicted Viral | 1 |
| All Organisms → Viruses → environmental samples → uncultured virus | 2 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Hypersaline Viral And Bacterial Communities From Bras Del Port, Santa Pola, Spain |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Microbial Mats → Hypersaline Samples → Hypersaline Viral And Bacterial Communities From Bras Del Port, Santa Pola, Spain |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | aquatic biome → saline evaporation pond → hypersaline water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Hypersaline (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Bras del Port, Santa Pola, Spain | |||||||
| Coordinates | Lat. (o) | 38.192206 | Long. (o) | -0.591865 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F062297 | Metagenome | 131 | N |
| F065465 | Metagenome | 127 | N |
| F076468 | Metagenome | 118 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| CR30julsep_10018 | All Organisms → Viruses → Predicted Viral | 1991 | Open in IMG/M |
| CR30julsep_10204 | All Organisms → Viruses → environmental samples → uncultured virus | 912 | Open in IMG/M |
| CR30julsep_10266 | All Organisms → Viruses → environmental samples → uncultured virus | 835 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| CR30julsep_10018 | CR30julsep_100184 | F065465 | MSEDITVVCECDVLDEARSMGYRRYADMPAADIVAAWPVHYTEHGSWDRHIEPTLRCLAGYEDRGHGTYQYRQEIALIQDGDEADMPTDAIILDSAYLLDDIIASWQAGAHTAVMDTIRQSDEYSLEDIQR* |
| CR30julsep_10055 | CR30julsep_100552 | F076468 | MTNLEEIDTKAVWLSGRYWRRESKVVHIDGDCDQLDSCDNPRGPVDPSVLQPDMSVCKRCDPTEPDQYGGSGTSLAHRLRHGDLQDATIDSDSVGGDE* |
| CR30julsep_10204 | CR30julsep_102043 | F062297 | MSMDDLKHCPRRYVVLAERTEDGRVVEQSVTGQSRAEELFERWDEGEQLCNLRVKAISAPMDDVTRHFEHDWPPTNNSP |
| CR30julsep_10266 | CR30julsep_102662 | F065465 | MSDTITVVCECDAKDEAHSMGYRRYADMPAADIVAAWPVHYTEHGSWDRHIEPTLRCLAGYDDAGYGTYQQRQEIALIRDGDESDHPADALLIDSMHLLDEITDAWYNGAHQAVCDTIRQSDEYSLEDIER* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |