Basic Information | |
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IMG/M Taxon OID | 3300003628 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0047180 | Gp0107761 | Ga0061034 |
Sample Name | Compost microbial communities from Sao Paulo Zoo, Brazil - ZC4 m-RNA DAY 78 |
Sequencing Status | Permanent Draft |
Sequencing Center | University of Sao Paulo, Virginia Bioinformatics Institute |
Published? | Y |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 10220813 |
Sequencing Scaffolds | 2 |
Novel Protein Genes | 3 |
Associated Families | 3 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
Not Available | 2 |
Ecosystem Assignment (GOLD) | |
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Name | Compost Microbial Communities From Sao Paulo Zoo, Brazil |
Type | Engineered |
Taxonomy | Engineered → Solid Waste → Zoo Waste → Composting → Unclassified → Compost → Compost Microbial Communities From Sao Paulo Zoo, Brazil |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | Unclassified |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
Location Information | ||||||||
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Location | Sao Paulo Zoo, Brazil | |||||||
Coordinates | Lat. (o) | -23.651072 | Long. (o) | -46.620675 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F026580 | Metagenome / Metatranscriptome | 197 | Y |
F055473 | Metagenome / Metatranscriptome | 138 | Y |
F059693 | Metagenome / Metatranscriptome | 133 | Y |
Scaffold | Taxonomy | Length | IMG/M Link |
---|---|---|---|
ZC4mRNADay78_117942 | Not Available | 537 | Open in IMG/M |
ZC4mRNADay78_122209 | Not Available | 2270 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
---|---|---|---|
ZC4mRNADay78_117942 | ZC4mRNADay78_1179421 | F026580 | CALPICRSEPGQVVQVGFGLERIAVTQRVSGCYCAPARAQDSGGLKKVCQTKDAERRDKVSLRTGKDTRSRQDP* |
ZC4mRNADay78_117942 | ZC4mRNADay78_1179422 | F055473 | VHQANAPSKAAADLVRNGQDAEESRRRVLVWFASRWRNHQLEQAEKPHSKASSRETLAGPATRPKTPLAVENSVG |
ZC4mRNADay78_122209 | ZC4mRNADay78_1222092 | F059693 | MTIRRSGLGRRETSGPPVMPCGALDSVGRPRRESGESEPGTSEVRVRAIRLGGRHRSDASRVFPTGRSQDLVVSKGASREEVRSSV* |
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