NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300003658

3300003658: Hypersaline viral and bacterial communities from Bras del Port, Santa Pola, Spain - HQ1totalprecorrection



Overview

Basic Information
IMG/M Taxon OID3300003658 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0069917 | Gp0108329 | Ga0062184
Sample NameHypersaline viral and bacterial communities from Bras del Port, Santa Pola, Spain - HQ1totalprecorrection
Sequencing StatusPermanent Draft
Sequencing CenterLifesequencing S.L.
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size2979539
Sequencing Scaffolds6
Novel Protein Genes7
Associated Families5

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Halorubraceae → Halorubrum → Halorubrum halophilum1
All Organisms → Viruses → environmental samples → uncultured virus3
Not Available1
All Organisms → Viruses → Predicted Viral1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHypersaline Viral And Bacterial Communities From Bras Del Port, Santa Pola, Spain
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Microbial Mats → Hypersaline Samples → Hypersaline Viral And Bacterial Communities From Bras Del Port, Santa Pola, Spain

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biome → saline evaporation pond → hypersaline water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Hypersaline (saline)

Location Information
Location
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F065465Metagenome127N
F066493Metagenome126Y
F072017Metagenome121Y
F076468Metagenome118N
F088354Metagenome109Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
HQ1_100012All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Halorubraceae → Halorubrum → Halorubrum halophilum2950Open in IMG/M
HQ1_100028All Organisms → Viruses → environmental samples → uncultured virus1832Open in IMG/M
HQ1_100031Not Available1682Open in IMG/M
HQ1_100080All Organisms → Viruses → Predicted Viral1104Open in IMG/M
HQ1_100119All Organisms → Viruses → environmental samples → uncultured virus923Open in IMG/M
HQ1_100265All Organisms → Viruses → environmental samples → uncultured virus660Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
HQ1_100012HQ1_1000126F066493MSEREWHDGVVDVADELVQEYSAAGAIERLQKRRQTENADLQARCNEAIAYIRREVIDE*
HQ1_100028HQ1_1000282F088354MTDTPRAQLDVDRFETTTVNANGQVYLGRDLEGAKVHVAVEIVTDTDEQEDPDE*
HQ1_100031HQ1_1000312F066493MSEREWHDGVVDVADELVQEYSAEGAIDRLQTRRKTSSDELQARCNEAIAYIRREVIDDQN*
HQ1_100080HQ1_1000803F065465MTEEITVVCECDVLDEARSMGYRRYADMPAADIVAAWPLEYASHGSWDSHILPTLRCLAGYGDRGYGTYQQRQDVALIQNGDEADMPADAIILDSGHLLDDVIDAWHSGRHQAITDTLRQSDEHSLEDIQR*
HQ1_100119HQ1_1001192F065465MTEDITVVCECDAKDEARTMGYRRYADMTAADIVASWPLEYASHGSWDTHILPTLRCLAGYADRGYGTYQQRQEIALIQDGDEADMPADAVVLDSGHLLDDLIEAWHSGRHQAITDTLRQSDEYSLEDIQR*
HQ1_100207HQ1_1002073F076468MTKLEEIDTKAVWLSGRYWRREHKVVHIDGDCDQLDACDNPRGPVDPSVLQPDMSVCKRCDPTEPDQYGGSGTSLAHRLRHGDLQDATIDSDSVGGDE*
HQ1_100265HQ1_1002651F072017MSKSTTSSLESQGDTNLKSTVHKHDAIHAVTQEHIDVFDEDDRLLDFYEWQQIIRSSETTVRRLAYSEIEEGVDQ*
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